Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02428

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02425 and BACOVA_02426 overlap by 4 nucleotidesBACOVA_02426 and BACOVA_02427 are separated by 179 nucleotidesBACOVA_02427 and BACOVA_02428 are separated by 133 nucleotidesBACOVA_02428 and BACOVA_02429 are separated by 138 nucleotides BACOVA_02425: BACOVA_02425 - hypothetical protein, at 191,435 to 192,055 _02425 BACOVA_02426: BACOVA_02426 - hypothetical protein, at 192,052 to 192,309 _02426 BACOVA_02427: BACOVA_02427 - hypothetical protein, at 192,489 to 192,599 _02427 BACOVA_02428: BACOVA_02428 - putative dTDP-4-dehydrorhamnose reductase, at 192,733 to 193,644 _02428 BACOVA_02429: BACOVA_02429 - hypothetical protein, at 193,783 to 194,952 _02429 Position (kb) 192 193 194Strain fitness (log2 ratio) -1 0 1 2at 191.748 kb on + strand, within BACOVA_02425at 191.909 kb on - strand, within BACOVA_02425at 191.931 kb on - strand, within BACOVA_02425at 191.936 kb on + strand, within BACOVA_02425at 191.942 kb on + strand, within BACOVA_02425at 191.950 kb on - strand, within BACOVA_02425at 191.950 kb on - strand, within BACOVA_02425at 192.011 kb on - strandat 192.030 kb on - strandat 192.032 kb on + strandat 192.033 kb on - strandat 192.079 kb on + strand, within BACOVA_02426at 192.264 kb on + strand, within BACOVA_02426at 192.280 kb on + strand, within BACOVA_02426at 192.280 kb on + strand, within BACOVA_02426at 192.281 kb on - strand, within BACOVA_02426at 192.336 kb on + strandat 192.337 kb on - strandat 192.337 kb on - strandat 192.338 kb on + strandat 192.434 kb on + strandat 192.572 kb on + strand, within BACOVA_02427at 192.577 kb on - strand, within BACOVA_02427at 192.636 kb on - strandat 192.719 kb on - strandat 192.810 kb on + strandat 192.811 kb on - strandat 192.991 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.054 kb on + strand, within BACOVA_02428at 193.087 kb on + strand, within BACOVA_02428at 193.088 kb on - strand, within BACOVA_02428at 193.094 kb on - strand, within BACOVA_02428at 193.094 kb on - strand, within BACOVA_02428at 193.098 kb on + strand, within BACOVA_02428at 193.101 kb on + strand, within BACOVA_02428at 193.102 kb on - strand, within BACOVA_02428at 193.102 kb on - strand, within BACOVA_02428at 193.248 kb on - strand, within BACOVA_02428at 193.248 kb on - strand, within BACOVA_02428at 193.249 kb on + strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.250 kb on - strand, within BACOVA_02428at 193.369 kb on - strand, within BACOVA_02428at 193.373 kb on + strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.374 kb on - strand, within BACOVA_02428at 193.486 kb on + strand, within BACOVA_02428at 193.488 kb on + strand, within BACOVA_02428at 193.508 kb on + strand, within BACOVA_02428at 193.532 kb on - strand, within BACOVA_02428at 193.533 kb on + strand, within BACOVA_02428at 193.565 kb on + strandat 193.572 kb on + strandat 193.591 kb on + strandat 193.630 kb on + strandat 193.631 kb on - strandat 193.653 kb on - strandat 193.654 kb on + strandat 193.654 kb on + strandat 193.654 kb on + strandat 193.655 kb on - strandat 193.668 kb on - strandat 193.733 kb on - strandat 193.757 kb on - strandat 193.757 kb on - strandat 193.768 kb on + strandat 193.812 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.852 kb on - strandat 193.893 kb on + strandat 193.894 kb on - strandat 193.900 kb on - strand, within BACOVA_02429at 193.900 kb on - strand, within BACOVA_02429at 193.900 kb on - strand, within BACOVA_02429at 193.942 kb on - strand, within BACOVA_02429at 194.010 kb on + strand, within BACOVA_02429at 194.049 kb on + strand, within BACOVA_02429at 194.050 kb on - strand, within BACOVA_02429at 194.055 kb on + strand, within BACOVA_02429at 194.074 kb on - strand, within BACOVA_02429at 194.074 kb on - strand, within BACOVA_02429at 194.214 kb on - strand, within BACOVA_02429at 194.242 kb on - strand, within BACOVA_02429at 194.332 kb on + strand, within BACOVA_02429at 194.333 kb on - strand, within BACOVA_02429at 194.337 kb on + strand, within BACOVA_02429at 194.338 kb on - strand, within BACOVA_02429at 194.350 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.395 kb on + strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.396 kb on - strand, within BACOVA_02429at 194.447 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.494 kb on - strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.541 kb on + strand, within BACOVA_02429at 194.550 kb on + strand, within BACOVA_02429at 194.563 kb on + strand, within BACOVA_02429at 194.564 kb on - strand, within BACOVA_02429at 194.630 kb on - strand, within BACOVA_02429

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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191,748 + BACOVA_02425 0.50 -0.9
191,909 - BACOVA_02425 0.76 -0.9
191,931 - BACOVA_02425 0.80 -0.9
191,936 + BACOVA_02425 0.81 -0.4
191,942 + BACOVA_02425 0.82 -0.9
191,950 - BACOVA_02425 0.83 -0.6
191,950 - BACOVA_02425 0.83 +0.4
192,011 - +1.9
192,030 - -0.6
192,032 + -0.4
192,033 - +0.9
192,079 + BACOVA_02426 0.10 -0.9
192,264 + BACOVA_02426 0.82 +0.7
192,280 + BACOVA_02426 0.88 -0.9
192,280 + BACOVA_02426 0.88 -1.1
192,281 - BACOVA_02426 0.89 -0.1
192,336 + +0.6
192,337 - -0.3
192,337 - -0.0
192,338 + -1.2
192,434 + -1.5
192,572 + BACOVA_02427 0.75 -0.1
192,577 - BACOVA_02427 0.79 +0.6
192,636 - +0.3
192,719 - +1.0
192,810 + +0.6
192,811 - -0.2
192,991 + BACOVA_02428 0.28 -0.6
193,019 + BACOVA_02428 0.31 +1.2
193,019 + BACOVA_02428 0.31 -0.8
193,054 + BACOVA_02428 0.35 +2.5
193,087 + BACOVA_02428 0.39 +1.3
193,088 - BACOVA_02428 0.39 +0.3
193,094 - BACOVA_02428 0.40 -0.9
193,094 - BACOVA_02428 0.40 -0.5
193,098 + BACOVA_02428 0.40 +0.1
193,101 + BACOVA_02428 0.40 -0.4
193,102 - BACOVA_02428 0.40 -0.1
193,102 - BACOVA_02428 0.40 -0.1
193,248 - BACOVA_02428 0.56 +1.9
193,248 - BACOVA_02428 0.56 -1.3
193,249 + BACOVA_02428 0.57 -1.2
193,250 - BACOVA_02428 0.57 -1.1
193,250 - BACOVA_02428 0.57 -1.4
193,250 - BACOVA_02428 0.57 -1.4
193,369 - BACOVA_02428 0.70 +0.4
193,373 + BACOVA_02428 0.70 +1.9
193,374 - BACOVA_02428 0.70 +0.0
193,374 - BACOVA_02428 0.70 +0.6
193,374 - BACOVA_02428 0.70 -0.7
193,486 + BACOVA_02428 0.83 -1.0
193,488 + BACOVA_02428 0.83 +0.7
193,508 + BACOVA_02428 0.85 +1.0
193,532 - BACOVA_02428 0.88 +0.5
193,533 + BACOVA_02428 0.88 +0.6
193,565 + -0.6
193,572 + -0.9
193,591 + +0.1
193,630 + +0.7
193,631 - +1.5
193,653 - +0.7
193,654 + -0.6
193,654 + +0.0
193,654 + -0.1
193,655 - -0.5
193,668 - +0.4
193,733 - -0.7
193,757 - -0.1
193,757 - -0.1
193,768 + -0.2
193,812 - -0.5
193,852 - +0.3
193,852 - -0.6
193,852 - -0.4
193,852 - +0.9
193,852 - +1.2
193,893 + -0.7
193,894 - -1.2
193,900 - BACOVA_02429 0.10 +0.9
193,900 - BACOVA_02429 0.10 -0.6
193,900 - BACOVA_02429 0.10 -0.9
193,942 - BACOVA_02429 0.14 -0.6
194,010 + BACOVA_02429 0.19 +0.9
194,049 + BACOVA_02429 0.23 +0.9
194,050 - BACOVA_02429 0.23 +0.7
194,055 + BACOVA_02429 0.23 -0.0
194,074 - BACOVA_02429 0.25 +0.9
194,074 - BACOVA_02429 0.25 +0.3
194,214 - BACOVA_02429 0.37 -0.1
194,242 - BACOVA_02429 0.39 +1.5
194,332 + BACOVA_02429 0.47 -0.2
194,333 - BACOVA_02429 0.47 -1.2
194,337 + BACOVA_02429 0.47 +0.6
194,338 - BACOVA_02429 0.47 +0.8
194,350 + BACOVA_02429 0.48 -1.1
194,395 + BACOVA_02429 0.52 +0.5
194,395 + BACOVA_02429 0.52 +0.5
194,396 - BACOVA_02429 0.52 +0.0
194,396 - BACOVA_02429 0.52 +0.1
194,396 - BACOVA_02429 0.52 +0.9
194,447 - BACOVA_02429 0.57 +0.3
194,494 - BACOVA_02429 0.61 -0.6
194,494 - BACOVA_02429 0.61 -0.2
194,541 + BACOVA_02429 0.65 -0.4
194,541 + BACOVA_02429 0.65 -0.6
194,550 + BACOVA_02429 0.66 -1.1
194,563 + BACOVA_02429 0.67 +0.1
194,564 - BACOVA_02429 0.67 +0.7
194,630 - BACOVA_02429 0.72 +0.4

Or see this region's nucleotide sequence