Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01540

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01538 and BACOVA_01539 are separated by 144 nucleotidesBACOVA_01539 and BACOVA_01540 are separated by 60 nucleotidesBACOVA_01540 and BACOVA_01541 are separated by 41 nucleotidesBACOVA_01541 and BACOVA_01542 are separated by 31 nucleotides BACOVA_01538: BACOVA_01538 - MIP family channel protein, at 36,123 to 36,782 _01538 BACOVA_01539: BACOVA_01539 - hypothetical protein, at 36,927 to 37,430 _01539 BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660 _01540 BACOVA_01541: BACOVA_01541 - DNA-binding protein HU, at 38,702 to 38,968 _01541 BACOVA_01542: BACOVA_01542 - hypothetical protein, at 39,000 to 41,870 _01542 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.507 kb on + strand, within BACOVA_01538at 36.528 kb on + strand, within BACOVA_01538at 36.533 kb on + strand, within BACOVA_01538at 36.535 kb on + strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.632 kb on - strand, within BACOVA_01538at 36.798 kb on - strandat 36.805 kb on + strandat 36.835 kb on + strandat 36.843 kb on - strandat 36.850 kb on + strandat 36.850 kb on + strandat 36.928 kb on + strandat 36.928 kb on + strandat 36.988 kb on + strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 37.016 kb on + strand, within BACOVA_01539at 37.017 kb on - strand, within BACOVA_01539at 37.096 kb on + strand, within BACOVA_01539at 37.186 kb on + strand, within BACOVA_01539at 37.187 kb on - strand, within BACOVA_01539at 37.273 kb on + strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.317 kb on - strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.320 kb on - strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.323 kb on + strand, within BACOVA_01539at 37.324 kb on - strand, within BACOVA_01539at 37.326 kb on + strand, within BACOVA_01539at 37.327 kb on - strand, within BACOVA_01539at 37.430 kb on + strandat 37.490 kb on - strandat 37.504 kb on - strandat 37.586 kb on + strandat 37.603 kb on - strandat 37.609 kb on + strand, within BACOVA_01540at 37.615 kb on + strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.748 kb on + strand, within BACOVA_01540at 37.749 kb on - strand, within BACOVA_01540at 37.769 kb on + strand, within BACOVA_01540at 37.770 kb on - strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.946 kb on - strand, within BACOVA_01540at 37.999 kb on - strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.295 kb on + strand, within BACOVA_01540at 38.314 kb on + strand, within BACOVA_01540at 38.341 kb on + strand, within BACOVA_01540at 38.454 kb on - strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.499 kb on - strand, within BACOVA_01540at 38.523 kb on - strand, within BACOVA_01540at 38.525 kb on - strand, within BACOVA_01540at 38.571 kb on - strandat 38.571 kb on - strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.626 kb on - strandat 38.628 kb on + strandat 38.708 kb on + strandat 38.857 kb on + strand, within BACOVA_01541at 38.857 kb on + strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.905 kb on + strand, within BACOVA_01541at 38.969 kb on - strandat 38.992 kb on - strandat 38.992 kb on - strandat 38.993 kb on + strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.995 kb on + strandat 39.001 kb on + strandat 39.080 kb on - strandat 39.087 kb on - strandat 39.105 kb on - strandat 39.114 kb on + strandat 39.114 kb on + strandat 39.115 kb on - strandat 39.119 kb on + strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.158 kb on + strandat 39.169 kb on - strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.171 kb on - strandat 39.172 kb on + strandat 39.172 kb on + strandat 39.173 kb on - strandat 39.191 kb on - strandat 39.226 kb on + strandat 39.227 kb on - strandat 39.281 kb on + strandat 39.336 kb on - strand, within BACOVA_01542at 39.365 kb on + strand, within BACOVA_01542at 39.367 kb on + strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.372 kb on + strand, within BACOVA_01542at 39.373 kb on - strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.377 kb on + strand, within BACOVA_01542at 39.378 kb on - strand, within BACOVA_01542at 39.387 kb on + strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.418 kb on - strand, within BACOVA_01542at 39.422 kb on + strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.445 kb on + strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.465 kb on + strand, within BACOVA_01542at 39.466 kb on - strand, within BACOVA_01542at 39.467 kb on + strand, within BACOVA_01542at 39.468 kb on - strand, within BACOVA_01542at 39.479 kb on + strand, within BACOVA_01542at 39.497 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.534 kb on - strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.536 kb on - strand, within BACOVA_01542at 39.537 kb on - strand, within BACOVA_01542at 39.554 kb on + strand, within BACOVA_01542at 39.555 kb on - strand, within BACOVA_01542at 39.560 kb on + strand, within BACOVA_01542at 39.561 kb on - strand, within BACOVA_01542at 39.564 kb on - strand, within BACOVA_01542at 39.582 kb on + strand, within BACOVA_01542at 39.605 kb on + strand, within BACOVA_01542at 39.658 kb on + strand, within BACOVA_01542at 39.659 kb on - strand, within BACOVA_01542

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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36,507 + BACOVA_01538 0.58 +0.4
36,528 + BACOVA_01538 0.61 -0.1
36,533 + BACOVA_01538 0.62 -0.8
36,535 + BACOVA_01538 0.62 -0.2
36,536 - BACOVA_01538 0.63 +1.2
36,536 - BACOVA_01538 0.63 +0.3
36,632 - BACOVA_01538 0.77 +0.6
36,798 - +0.3
36,805 + -1.3
36,835 + +0.2
36,843 - +0.9
36,850 + -0.1
36,850 + +0.0
36,928 + -0.4
36,928 + -0.9
36,988 + BACOVA_01539 0.12 -1.1
36,989 - BACOVA_01539 0.12 -0.3
36,989 - BACOVA_01539 0.12 +1.1
37,016 + BACOVA_01539 0.18 +0.7
37,017 - BACOVA_01539 0.18 +0.3
37,096 + BACOVA_01539 0.34 +0.2
37,186 + BACOVA_01539 0.51 -0.1
37,187 - BACOVA_01539 0.52 +0.7
37,273 + BACOVA_01539 0.69 +1.7
37,274 - BACOVA_01539 0.69 -0.1
37,274 - BACOVA_01539 0.69 +1.2
37,316 + BACOVA_01539 0.77 -0.9
37,316 + BACOVA_01539 0.77 +0.1
37,317 - BACOVA_01539 0.77 +0.6
37,319 + BACOVA_01539 0.78 +0.8
37,319 + BACOVA_01539 0.78 +0.1
37,319 + BACOVA_01539 0.78 -1.5
37,319 + BACOVA_01539 0.78 +0.1
37,319 + BACOVA_01539 0.78 -0.8
37,320 - BACOVA_01539 0.78 -0.2
37,321 + BACOVA_01539 0.78 -0.2
37,321 + BACOVA_01539 0.78 +0.2
37,321 + BACOVA_01539 0.78 +0.3
37,322 - BACOVA_01539 0.78 -0.6
37,322 - BACOVA_01539 0.78 -0.1
37,322 - BACOVA_01539 0.78 +0.6
37,323 + BACOVA_01539 0.79 -1.2
37,324 - BACOVA_01539 0.79 -0.2
37,326 + BACOVA_01539 0.79 -2.0
37,327 - BACOVA_01539 0.79 +0.2
37,430 + -0.2
37,490 - +0.4
37,504 - +1.0
37,586 + -0.8
37,603 - +0.8
37,609 + BACOVA_01540 0.10 -0.9
37,615 + BACOVA_01540 0.11 -0.2
37,616 - BACOVA_01540 0.11 +0.6
37,616 - BACOVA_01540 0.11 +1.0
37,616 - BACOVA_01540 0.11 +0.1
37,748 + BACOVA_01540 0.22 -0.4
37,749 - BACOVA_01540 0.22 +0.2
37,769 + BACOVA_01540 0.24 -0.7
37,770 - BACOVA_01540 0.24 +0.7
37,925 + BACOVA_01540 0.37 -1.7
37,925 + BACOVA_01540 0.37 +0.3
37,946 - BACOVA_01540 0.39 +0.5
37,999 - BACOVA_01540 0.43 -0.3
38,004 + BACOVA_01540 0.44 +1.2
38,004 + BACOVA_01540 0.44 -0.5
38,295 + BACOVA_01540 0.69 +0.8
38,314 + BACOVA_01540 0.70 -0.7
38,341 + BACOVA_01540 0.73 +0.7
38,454 - BACOVA_01540 0.82 +0.5
38,494 + BACOVA_01540 0.86 +0.1
38,494 + BACOVA_01540 0.86 +0.1
38,494 + BACOVA_01540 0.86 +0.4
38,494 + BACOVA_01540 0.86 -0.8
38,494 + BACOVA_01540 0.86 +0.8
38,499 - BACOVA_01540 0.86 +0.2
38,523 - BACOVA_01540 0.88 +0.7
38,525 - BACOVA_01540 0.88 +0.2
38,571 - +0.5
38,571 - -0.3
38,625 + -2.0
38,625 + -0.5
38,626 - -0.6
38,628 + -1.6
38,708 + +1.6
38,857 + BACOVA_01541 0.58 -0.6
38,857 + BACOVA_01541 0.58 +0.2
38,895 - BACOVA_01541 0.72 +1.1
38,895 - BACOVA_01541 0.72 +1.7
38,905 + BACOVA_01541 0.76 +0.4
38,969 - +1.1
38,992 - +1.5
38,992 - +0.7
38,993 + -0.0
38,994 - +0.8
38,994 - +1.0
38,994 - +1.7
38,995 + -0.1
39,001 + +1.1
39,080 - +0.9
39,087 - +0.8
39,105 - +0.5
39,114 + -0.6
39,114 + +0.1
39,115 - +1.8
39,119 + +1.0
39,120 - +1.0
39,120 - -0.1
39,120 - -0.6
39,158 + -0.9
39,169 - +1.0
39,170 + -0.6
39,170 + -0.4
39,170 + -0.1
39,170 + +0.7
39,170 + -0.7
39,171 - +1.1
39,172 + -0.4
39,172 + +0.5
39,173 - +0.8
39,191 - +0.7
39,226 + -0.3
39,227 - +0.6
39,281 + +0.3
39,336 - BACOVA_01542 0.12 -0.8
39,365 + BACOVA_01542 0.13 -0.6
39,367 + BACOVA_01542 0.13 -0.3
39,368 - BACOVA_01542 0.13 +1.0
39,368 - BACOVA_01542 0.13 +1.6
39,368 - BACOVA_01542 0.13 +1.4
39,372 + BACOVA_01542 0.13 +0.7
39,373 - BACOVA_01542 0.13 +0.0
39,375 + BACOVA_01542 0.13 +0.5
39,375 + BACOVA_01542 0.13 +0.4
39,377 + BACOVA_01542 0.13 +1.0
39,378 - BACOVA_01542 0.13 +0.2
39,387 + BACOVA_01542 0.13 -1.8
39,401 - BACOVA_01542 0.14 +0.4
39,401 - BACOVA_01542 0.14 -0.1
39,402 + BACOVA_01542 0.14 -1.2
39,402 + BACOVA_01542 0.14 -1.2
39,403 - BACOVA_01542 0.14 +1.0
39,403 - BACOVA_01542 0.14 +0.8
39,403 - BACOVA_01542 0.14 +0.7
39,403 - BACOVA_01542 0.14 +1.0
39,418 - BACOVA_01542 0.15 +0.1
39,422 + BACOVA_01542 0.15 -2.1
39,423 - BACOVA_01542 0.15 +0.7
39,423 - BACOVA_01542 0.15 +0.7
39,445 + BACOVA_01542 0.15 +0.1
39,446 - BACOVA_01542 0.16 +1.7
39,446 - BACOVA_01542 0.16 +1.8
39,446 - BACOVA_01542 0.16 +0.4
39,465 + BACOVA_01542 0.16 +0.2
39,466 - BACOVA_01542 0.16 +1.4
39,467 + BACOVA_01542 0.16 +0.7
39,468 - BACOVA_01542 0.16 +0.9
39,479 + BACOVA_01542 0.17 +1.2
39,497 + BACOVA_01542 0.17 +0.7
39,511 + BACOVA_01542 0.18 +1.7
39,511 + BACOVA_01542 0.18 +1.1
39,534 - BACOVA_01542 0.19 -0.3
39,535 + BACOVA_01542 0.19 +1.4
39,535 + BACOVA_01542 0.19 -0.5
39,536 - BACOVA_01542 0.19 +1.7
39,537 - BACOVA_01542 0.19 +1.3
39,554 + BACOVA_01542 0.19 +0.0
39,555 - BACOVA_01542 0.19 +1.4
39,560 + BACOVA_01542 0.20 -0.2
39,561 - BACOVA_01542 0.20 +1.4
39,564 - BACOVA_01542 0.20 +0.2
39,582 + BACOVA_01542 0.20 +0.1
39,605 + BACOVA_01542 0.21 -0.7
39,658 + BACOVA_01542 0.23 -0.6
39,659 - BACOVA_01542 0.23 +0.1

Or see this region's nucleotide sequence