Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00783 and BACOVA_00784 are separated by 97 nucleotides BACOVA_00784 and BACOVA_00785 are separated by 176 nucleotides BACOVA_00785 and BACOVA_00786 are separated by 30 nucleotides
BACOVA_00783: BACOVA_00783 - hypothetical protein, at 467,450 to 467,686
_00783
BACOVA_00784: BACOVA_00784 - Sigma-70 region 2, at 467,784 to 468,335
_00784
BACOVA_00785: BACOVA_00785 - hypothetical protein, at 468,512 to 471,631
_00785
BACOVA_00786: BACOVA_00786 - hypothetical protein, at 471,662 to 473,344
_00786
Position (kb) 468
469
470
471
472 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 467.516 kb on + strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.556 kb on - strand, within BACOVA_00783 at 467.563 kb on + strand, within BACOVA_00783 at 467.640 kb on - strand, within BACOVA_00783 at 467.652 kb on + strand, within BACOVA_00783 at 467.652 kb on + strand, within BACOVA_00783 at 467.701 kb on + strand at 467.701 kb on + strand at 467.702 kb on - strand at 467.702 kb on - strand at 467.723 kb on + strand at 467.727 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.751 kb on + strand at 467.752 kb on - strand at 467.752 kb on - strand at 467.752 kb on - strand at 467.755 kb on + strand at 467.846 kb on - strand, within BACOVA_00784 at 467.846 kb on - strand, within BACOVA_00784 at 467.852 kb on + strand, within BACOVA_00784 at 467.853 kb on - strand, within BACOVA_00784 at 467.859 kb on - strand, within BACOVA_00784 at 467.870 kb on + strand, within BACOVA_00784 at 467.892 kb on + strand, within BACOVA_00784 at 467.893 kb on - strand, within BACOVA_00784 at 467.895 kb on - strand, within BACOVA_00784 at 467.900 kb on - strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.901 kb on + strand, within BACOVA_00784 at 467.907 kb on - strand, within BACOVA_00784 at 467.932 kb on - strand, within BACOVA_00784 at 467.992 kb on + strand, within BACOVA_00784 at 467.993 kb on - strand, within BACOVA_00784 at 468.003 kb on + strand, within BACOVA_00784 at 468.004 kb on - strand, within BACOVA_00784 at 468.011 kb on + strand, within BACOVA_00784 at 468.021 kb on + strand, within BACOVA_00784 at 468.027 kb on - strand, within BACOVA_00784 at 468.053 kb on + strand, within BACOVA_00784 at 468.055 kb on + strand, within BACOVA_00784 at 468.055 kb on + strand, within BACOVA_00784 at 468.056 kb on - strand, within BACOVA_00784 at 468.059 kb on + strand, within BACOVA_00784 at 468.059 kb on + strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.060 kb on - strand, within BACOVA_00784 at 468.109 kb on + strand, within BACOVA_00784 at 468.135 kb on + strand, within BACOVA_00784 at 468.200 kb on + strand, within BACOVA_00784 at 468.251 kb on + strand, within BACOVA_00784 at 468.254 kb on - strand, within BACOVA_00784 at 468.320 kb on + strand at 468.335 kb on + strand at 468.335 kb on + strand at 468.335 kb on + strand at 468.336 kb on - strand at 468.436 kb on + strand at 468.488 kb on + strand at 468.514 kb on - strand at 468.515 kb on + strand at 468.521 kb on - strand at 468.535 kb on + strand at 468.635 kb on + strand at 468.636 kb on - strand at 468.638 kb on + strand at 468.740 kb on - strand at 468.787 kb on + strand at 468.788 kb on - strand at 468.916 kb on + strand, within BACOVA_00785 at 468.916 kb on + strand, within BACOVA_00785 at 468.917 kb on - strand, within BACOVA_00785 at 468.917 kb on - strand, within BACOVA_00785 at 468.918 kb on + strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.919 kb on - strand, within BACOVA_00785 at 468.979 kb on + strand, within BACOVA_00785 at 469.019 kb on - strand, within BACOVA_00785 at 469.021 kb on - strand, within BACOVA_00785 at 469.030 kb on - strand, within BACOVA_00785 at 469.043 kb on - strand, within BACOVA_00785 at 469.046 kb on - strand, within BACOVA_00785 at 469.046 kb on - strand, within BACOVA_00785 at 469.109 kb on + strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.110 kb on - strand, within BACOVA_00785 at 469.116 kb on - strand, within BACOVA_00785 at 469.176 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.264 kb on - strand, within BACOVA_00785 at 469.297 kb on + strand, within BACOVA_00785 at 469.298 kb on - strand, within BACOVA_00785 at 469.305 kb on + strand, within BACOVA_00785 at 469.306 kb on - strand, within BACOVA_00785 at 469.381 kb on + strand, within BACOVA_00785 at 469.381 kb on + strand, within BACOVA_00785 at 469.382 kb on - strand, within BACOVA_00785 at 469.431 kb on - strand, within BACOVA_00785 at 469.503 kb on - strand, within BACOVA_00785 at 469.580 kb on - strand, within BACOVA_00785 at 469.599 kb on + strand, within BACOVA_00785 at 469.599 kb on + strand, within BACOVA_00785 at 469.613 kb on + strand, within BACOVA_00785 at 469.843 kb on + strand, within BACOVA_00785 at 469.924 kb on + strand, within BACOVA_00785 at 469.934 kb on - strand, within BACOVA_00785 at 469.972 kb on + strand, within BACOVA_00785 at 469.972 kb on + strand, within BACOVA_00785 at 469.987 kb on - strand, within BACOVA_00785 at 470.013 kb on - strand, within BACOVA_00785 at 470.065 kb on - strand, within BACOVA_00785 at 470.265 kb on + strand, within BACOVA_00785 at 470.265 kb on + strand, within BACOVA_00785 at 470.411 kb on - strand, within BACOVA_00785 at 470.415 kb on - strand, within BACOVA_00785 at 470.417 kb on + strand, within BACOVA_00785 at 470.452 kb on + strand, within BACOVA_00785 at 470.479 kb on - strand, within BACOVA_00785 at 470.570 kb on + strand, within BACOVA_00785 at 470.660 kb on - strand, within BACOVA_00785 at 470.688 kb on - strand, within BACOVA_00785 at 470.759 kb on - strand, within BACOVA_00785 at 470.759 kb on - strand, within BACOVA_00785 at 470.821 kb on + strand, within BACOVA_00785 at 470.863 kb on - strand, within BACOVA_00785 at 470.863 kb on - strand, within BACOVA_00785 at 470.886 kb on + strand, within BACOVA_00785 at 471.008 kb on - strand, within BACOVA_00785 at 471.199 kb on - strand, within BACOVA_00785 at 471.237 kb on - strand, within BACOVA_00785 at 471.287 kb on - strand, within BACOVA_00785 at 471.329 kb on + strand at 471.329 kb on + strand at 471.372 kb on - strand at 471.375 kb on + strand at 471.407 kb on - strand at 471.407 kb on - strand at 471.425 kb on + strand at 471.472 kb on + strand at 471.472 kb on + strand at 471.473 kb on - strand at 471.473 kb on - strand at 471.474 kb on + strand at 471.551 kb on + strand at 471.551 kb on + strand at 471.596 kb on + strand at 471.618 kb on - strand at 471.618 kb on - strand at 471.623 kb on + strand at 471.624 kb on - strand at 471.637 kb on + strand at 471.645 kb on - strand at 471.686 kb on - strand at 471.697 kb on - strand at 471.742 kb on + strand at 471.743 kb on - strand at 471.753 kb on + strand at 471.770 kb on - strand at 471.876 kb on - strand, within BACOVA_00786 at 471.889 kb on + strand, within BACOVA_00786 at 471.919 kb on + strand, within BACOVA_00786 at 471.942 kb on + strand, within BACOVA_00786 at 471.942 kb on + strand, within BACOVA_00786 at 471.973 kb on - strand, within BACOVA_00786 at 472.049 kb on + strand, within BACOVA_00786 at 472.072 kb on + strand, within BACOVA_00786 at 472.079 kb on + strand, within BACOVA_00786 at 472.080 kb on - strand, within BACOVA_00786 at 472.085 kb on - strand, within BACOVA_00786 at 472.085 kb on - strand, within BACOVA_00786 at 472.089 kb on - strand, within BACOVA_00786 at 472.099 kb on + strand, within BACOVA_00786 at 472.100 kb on - strand, within BACOVA_00786 at 472.102 kb on - strand, within BACOVA_00786 at 472.164 kb on - strand, within BACOVA_00786 at 472.164 kb on - strand, within BACOVA_00786 at 472.206 kb on - strand, within BACOVA_00786 at 472.222 kb on + strand, within BACOVA_00786 at 472.253 kb on - strand, within BACOVA_00786 at 472.255 kb on + strand, within BACOVA_00786 at 472.350 kb on - strand, within BACOVA_00786 at 472.390 kb on + strand, within BACOVA_00786 at 472.390 kb on + strand, within BACOVA_00786 at 472.391 kb on - strand, within BACOVA_00786 at 472.396 kb on - strand, within BACOVA_00786 at 472.534 kb on + strand, within BACOVA_00786 at 472.541 kb on - strand, within BACOVA_00786 at 472.576 kb on - strand, within BACOVA_00786 at 472.579 kb on + strand, within BACOVA_00786 at 472.615 kb on + strand, within BACOVA_00786 at 472.622 kb on + strand, within BACOVA_00786
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 467,516 + BACOVA_00783 0.28 -0.6 467,556 - BACOVA_00783 0.45 +0.3 467,556 - BACOVA_00783 0.45 +1.1 467,556 - BACOVA_00783 0.45 +1.0 467,563 + BACOVA_00783 0.48 +0.6 467,640 - BACOVA_00783 0.80 +1.3 467,652 + BACOVA_00783 0.85 +0.1 467,652 + BACOVA_00783 0.85 +0.2 467,701 + +1.0 467,701 + -0.5 467,702 - +0.2 467,702 - +0.7 467,723 + +0.0 467,727 + -0.2 467,751 + +1.1 467,751 + +0.4 467,751 + -0.1 467,751 + +0.7 467,752 - -1.6 467,752 - -2.3 467,752 - -0.8 467,755 + -0.3 467,846 - BACOVA_00784 0.11 -0.3 467,846 - BACOVA_00784 0.11 -0.5 467,852 + BACOVA_00784 0.12 -2.2 467,853 - BACOVA_00784 0.12 -0.6 467,859 - BACOVA_00784 0.14 +0.3 467,870 + BACOVA_00784 0.16 -0.9 467,892 + BACOVA_00784 0.20 -1.4 467,893 - BACOVA_00784 0.20 +0.3 467,895 - BACOVA_00784 0.20 +0.3 467,900 - BACOVA_00784 0.21 -0.7 467,901 + BACOVA_00784 0.21 +0.9 467,901 + BACOVA_00784 0.21 -0.1 467,901 + BACOVA_00784 0.21 +0.0 467,907 - BACOVA_00784 0.22 -1.5 467,932 - BACOVA_00784 0.27 -0.8 467,992 + BACOVA_00784 0.38 +0.6 467,993 - BACOVA_00784 0.38 +0.2 468,003 + BACOVA_00784 0.40 +0.7 468,004 - BACOVA_00784 0.40 -1.1 468,011 + BACOVA_00784 0.41 -2.3 468,021 + BACOVA_00784 0.43 -0.6 468,027 - BACOVA_00784 0.44 -0.6 468,053 + BACOVA_00784 0.49 -1.1 468,055 + BACOVA_00784 0.49 -0.7 468,055 + BACOVA_00784 0.49 +1.0 468,056 - BACOVA_00784 0.49 +0.5 468,059 + BACOVA_00784 0.50 +1.3 468,059 + BACOVA_00784 0.50 -2.5 468,060 - BACOVA_00784 0.50 -0.1 468,060 - BACOVA_00784 0.50 -0.9 468,060 - BACOVA_00784 0.50 -0.7 468,109 + BACOVA_00784 0.59 -1.8 468,135 + BACOVA_00784 0.64 -0.3 468,200 + BACOVA_00784 0.75 -0.9 468,251 + BACOVA_00784 0.85 +1.4 468,254 - BACOVA_00784 0.85 -0.3 468,320 + -0.3 468,335 + -1.2 468,335 + +1.2 468,335 + -0.7 468,336 - +0.4 468,436 + +0.1 468,488 + +1.3 468,514 - -0.1 468,515 + +1.3 468,521 - +1.6 468,535 + -0.6 468,635 + +0.3 468,636 - +1.1 468,638 + -1.3 468,740 - -1.7 468,787 + -0.5 468,788 - +1.5 468,916 + BACOVA_00785 0.13 +0.3 468,916 + BACOVA_00785 0.13 +0.5 468,917 - BACOVA_00785 0.13 -0.8 468,917 - BACOVA_00785 0.13 -1.3 468,918 + BACOVA_00785 0.13 +0.4 468,919 - BACOVA_00785 0.13 -0.2 468,919 - BACOVA_00785 0.13 +1.5 468,919 - BACOVA_00785 0.13 +3.0 468,979 + BACOVA_00785 0.15 -0.6 469,019 - BACOVA_00785 0.16 +0.2 469,021 - BACOVA_00785 0.16 +0.3 469,030 - BACOVA_00785 0.17 -0.0 469,043 - BACOVA_00785 0.17 +1.1 469,046 - BACOVA_00785 0.17 -0.9 469,046 - BACOVA_00785 0.17 +0.2 469,109 + BACOVA_00785 0.19 +0.7 469,110 - BACOVA_00785 0.19 -0.2 469,110 - BACOVA_00785 0.19 +1.3 469,110 - BACOVA_00785 0.19 -0.3 469,110 - BACOVA_00785 0.19 +0.6 469,116 - BACOVA_00785 0.19 -0.2 469,176 - BACOVA_00785 0.21 -1.5 469,264 - BACOVA_00785 0.24 +0.3 469,264 - BACOVA_00785 0.24 -0.1 469,264 - BACOVA_00785 0.24 +1.2 469,297 + BACOVA_00785 0.25 -0.8 469,298 - BACOVA_00785 0.25 +0.2 469,305 + BACOVA_00785 0.25 +0.2 469,306 - BACOVA_00785 0.25 +0.9 469,381 + BACOVA_00785 0.28 +1.9 469,381 + BACOVA_00785 0.28 +0.4 469,382 - BACOVA_00785 0.28 +0.4 469,431 - BACOVA_00785 0.29 -1.1 469,503 - BACOVA_00785 0.32 -0.6 469,580 - BACOVA_00785 0.34 +0.5 469,599 + BACOVA_00785 0.35 +0.0 469,599 + BACOVA_00785 0.35 -2.0 469,613 + BACOVA_00785 0.35 -1.4 469,843 + BACOVA_00785 0.43 +0.6 469,924 + BACOVA_00785 0.45 +1.9 469,934 - BACOVA_00785 0.46 -1.1 469,972 + BACOVA_00785 0.47 +0.4 469,972 + BACOVA_00785 0.47 +1.9 469,987 - BACOVA_00785 0.47 -0.5 470,013 - BACOVA_00785 0.48 -1.2 470,065 - BACOVA_00785 0.50 -0.2 470,265 + BACOVA_00785 0.56 -2.4 470,265 + BACOVA_00785 0.56 -1.4 470,411 - BACOVA_00785 0.61 -0.9 470,415 - BACOVA_00785 0.61 +0.5 470,417 + BACOVA_00785 0.61 +0.1 470,452 + BACOVA_00785 0.62 -0.5 470,479 - BACOVA_00785 0.63 -0.3 470,570 + BACOVA_00785 0.66 -0.3 470,660 - BACOVA_00785 0.69 -0.3 470,688 - BACOVA_00785 0.70 -0.9 470,759 - BACOVA_00785 0.72 -0.7 470,759 - BACOVA_00785 0.72 -1.7 470,821 + BACOVA_00785 0.74 -0.1 470,863 - BACOVA_00785 0.75 +0.6 470,863 - BACOVA_00785 0.75 +0.7 470,886 + BACOVA_00785 0.76 -2.1 471,008 - BACOVA_00785 0.80 -0.5 471,199 - BACOVA_00785 0.86 -1.0 471,237 - BACOVA_00785 0.87 -0.8 471,287 - BACOVA_00785 0.89 +1.0 471,329 + -0.2 471,329 + +1.1 471,372 - +0.2 471,375 + -0.4 471,407 - +0.8 471,407 - -0.4 471,425 + -0.8 471,472 + +0.6 471,472 + -0.0 471,473 - -0.0 471,473 - +0.6 471,474 + +0.3 471,551 + +0.7 471,551 + +0.5 471,596 + +0.0 471,618 - +0.2 471,618 - -0.8 471,623 + -0.0 471,624 - +0.3 471,637 + +1.1 471,645 - -1.4 471,686 - -0.2 471,697 - +0.6 471,742 + -1.1 471,743 - +0.9 471,753 + +0.8 471,770 - +0.6 471,876 - BACOVA_00786 0.13 +0.3 471,889 + BACOVA_00786 0.13 +0.8 471,919 + BACOVA_00786 0.15 +0.6 471,942 + BACOVA_00786 0.17 -0.1 471,942 + BACOVA_00786 0.17 -1.1 471,973 - BACOVA_00786 0.18 -0.6 472,049 + BACOVA_00786 0.23 -0.5 472,072 + BACOVA_00786 0.24 +0.8 472,079 + BACOVA_00786 0.25 +0.1 472,080 - BACOVA_00786 0.25 -0.7 472,085 - BACOVA_00786 0.25 -0.4 472,085 - BACOVA_00786 0.25 -0.4 472,089 - BACOVA_00786 0.25 -0.8 472,099 + BACOVA_00786 0.26 +0.3 472,100 - BACOVA_00786 0.26 -1.5 472,102 - BACOVA_00786 0.26 -0.7 472,164 - BACOVA_00786 0.30 +0.3 472,164 - BACOVA_00786 0.30 +1.1 472,206 - BACOVA_00786 0.32 +0.4 472,222 + BACOVA_00786 0.33 +0.6 472,253 - BACOVA_00786 0.35 -1.7 472,255 + BACOVA_00786 0.35 +0.2 472,350 - BACOVA_00786 0.41 -0.1 472,390 + BACOVA_00786 0.43 +0.3 472,390 + BACOVA_00786 0.43 -0.4 472,391 - BACOVA_00786 0.43 +0.9 472,396 - BACOVA_00786 0.44 -0.7 472,534 + BACOVA_00786 0.52 -0.2 472,541 - BACOVA_00786 0.52 -2.1 472,576 - BACOVA_00786 0.54 +1.2 472,579 + BACOVA_00786 0.54 -1.8 472,615 + BACOVA_00786 0.57 -0.5 472,622 + BACOVA_00786 0.57 +1.3
Or see this region's nucleotide sequence