Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00669 and BACOVA_00670 overlap by 4 nucleotides BACOVA_00670 and BACOVA_00671 are separated by 58 nucleotides BACOVA_00671 and BACOVA_00672 overlap by 4 nucleotides BACOVA_00672 and BACOVA_00673 are separated by 39 nucleotides
BACOVA_00669: BACOVA_00669 - Sigma-70 region 2, at 30,259 to 30,810
_00669
BACOVA_00670: BACOVA_00670 - hypothetical protein, at 30,807 to 31,586
_00670
BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159
_00671
BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959
_00672
BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157
_00673
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 30.649 kb on - strand, within BACOVA_00669 at 30.649 kb on - strand, within BACOVA_00669 at 30.726 kb on - strand, within BACOVA_00669 at 30.790 kb on + strand at 30.790 kb on + strand at 30.790 kb on + strand at 30.791 kb on - strand at 30.792 kb on + strand at 30.793 kb on - strand at 30.812 kb on + strand at 30.812 kb on + strand at 30.813 kb on - strand at 30.884 kb on + strand at 30.894 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.924 kb on - strand, within BACOVA_00670 at 30.933 kb on - strand, within BACOVA_00670 at 31.007 kb on + strand, within BACOVA_00670 at 31.304 kb on + strand, within BACOVA_00670 at 31.373 kb on + strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.374 kb on - strand, within BACOVA_00670 at 31.448 kb on + strand, within BACOVA_00670 at 31.466 kb on + strand, within BACOVA_00670 at 31.467 kb on - strand, within BACOVA_00670 at 31.554 kb on + strand at 31.572 kb on + strand at 31.621 kb on - strand at 31.626 kb on + strand at 31.627 kb on - strand at 31.630 kb on + strand at 31.633 kb on + strand at 31.634 kb on - strand at 31.638 kb on + strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.639 kb on - strand at 31.661 kb on + strand at 31.683 kb on + strand at 31.724 kb on - strand at 31.867 kb on + strand, within BACOVA_00671 at 31.904 kb on + strand, within BACOVA_00671 at 31.925 kb on - strand, within BACOVA_00671 at 31.973 kb on - strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.045 kb on + strand, within BACOVA_00671 at 32.181 kb on - strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.232 kb on + strand, within BACOVA_00671 at 32.233 kb on - strand, within BACOVA_00671 at 32.322 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.355 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.357 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.361 kb on + strand, within BACOVA_00671 at 32.362 kb on - strand, within BACOVA_00671 at 32.364 kb on + strand, within BACOVA_00671 at 32.365 kb on - strand, within BACOVA_00671 at 32.376 kb on + strand, within BACOVA_00671 at 32.439 kb on - strand, within BACOVA_00671 at 32.468 kb on + strand, within BACOVA_00671 at 32.541 kb on + strand, within BACOVA_00671 at 32.609 kb on + strand, within BACOVA_00671 at 32.785 kb on + strand, within BACOVA_00671 at 32.786 kb on - strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.787 kb on + strand, within BACOVA_00671 at 32.898 kb on + strand, within BACOVA_00671 at 32.940 kb on - strand, within BACOVA_00671 at 32.962 kb on + strand, within BACOVA_00671 at 32.982 kb on + strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.983 kb on - strand, within BACOVA_00671 at 32.988 kb on - strand, within BACOVA_00671 at 33.033 kb on + strand at 33.034 kb on - strand at 33.034 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.131 kb on - strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.157 kb on + strand at 33.256 kb on + strand, within BACOVA_00672 at 33.256 kb on + strand, within BACOVA_00672 at 33.257 kb on - strand, within BACOVA_00672 at 33.350 kb on - strand, within BACOVA_00672 at 33.364 kb on - strand, within BACOVA_00672 at 33.366 kb on + strand, within BACOVA_00672 at 33.367 kb on - strand, within BACOVA_00672 at 33.399 kb on - strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.624 kb on + strand, within BACOVA_00672 at 33.647 kb on + strand, within BACOVA_00672 at 33.667 kb on - strand, within BACOVA_00672 at 33.709 kb on + strand, within BACOVA_00672 at 33.710 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.746 kb on + strand, within BACOVA_00672 at 33.747 kb on - strand, within BACOVA_00672 at 33.760 kb on - strand, within BACOVA_00672 at 33.823 kb on + strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.853 kb on + strand, within BACOVA_00672 at 33.873 kb on + strand, within BACOVA_00672 at 33.874 kb on - strand, within BACOVA_00672 at 33.933 kb on + strand at 33.933 kb on + strand at 33.934 kb on - strand at 33.941 kb on + strand at 33.954 kb on + strand at 33.963 kb on + strand at 33.986 kb on + strand at 33.987 kb on - strand at 34.015 kb on + strand, within BACOVA_00673 at 34.016 kb on - strand, within BACOVA_00673 at 34.020 kb on + strand, within BACOVA_00673 at 34.021 kb on - strand, within BACOVA_00673 at 34.033 kb on + strand, within BACOVA_00673 at 34.069 kb on + strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.107 kb on + strand, within BACOVA_00673 at 34.108 kb on - strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.110 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.124 kb on + strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 30,649 - BACOVA_00669 0.71 +0.9 30,649 - BACOVA_00669 0.71 -0.5 30,726 - BACOVA_00669 0.85 +0.5 30,790 + +1.4 30,790 + +0.6 30,790 + -0.2 30,791 - +1.7 30,792 + +0.6 30,793 - -0.1 30,812 + +1.7 30,812 + +1.7 30,813 - +0.9 30,884 + +1.2 30,894 - BACOVA_00670 0.11 +1.2 30,924 - BACOVA_00670 0.15 -0.3 30,924 - BACOVA_00670 0.15 -0.9 30,933 - BACOVA_00670 0.16 +0.8 31,007 + BACOVA_00670 0.26 +0.6 31,304 + BACOVA_00670 0.64 -1.0 31,373 + BACOVA_00670 0.73 -0.7 31,374 - BACOVA_00670 0.73 +0.1 31,374 - BACOVA_00670 0.73 +0.5 31,448 + BACOVA_00670 0.82 +0.6 31,466 + BACOVA_00670 0.84 +0.2 31,467 - BACOVA_00670 0.85 +1.8 31,554 + -2.0 31,572 + -1.1 31,621 - +1.1 31,626 + +0.1 31,627 - +0.4 31,630 + -1.4 31,633 + -1.0 31,634 - -0.1 31,638 + +0.3 31,639 - +0.4 31,639 - +0.4 31,639 - -0.8 31,661 + +0.2 31,683 + +0.5 31,724 - -1.1 31,867 + BACOVA_00671 0.15 +1.1 31,904 + BACOVA_00671 0.17 +1.8 31,925 - BACOVA_00671 0.18 +1.6 31,973 - BACOVA_00671 0.22 -1.9 32,045 + BACOVA_00671 0.26 -0.7 32,045 + BACOVA_00671 0.26 +0.0 32,181 - BACOVA_00671 0.35 +0.4 32,232 + BACOVA_00671 0.39 -0.1 32,232 + BACOVA_00671 0.39 +1.5 32,233 - BACOVA_00671 0.39 +1.2 32,322 + BACOVA_00671 0.45 +1.4 32,355 + BACOVA_00671 0.47 -0.1 32,355 + BACOVA_00671 0.47 -0.6 32,355 + BACOVA_00671 0.47 +1.0 32,355 + BACOVA_00671 0.47 -0.8 32,355 + BACOVA_00671 0.47 -0.9 32,357 + BACOVA_00671 0.47 -1.0 32,357 + BACOVA_00671 0.47 -1.0 32,361 + BACOVA_00671 0.47 -0.1 32,361 + BACOVA_00671 0.47 -0.8 32,361 + BACOVA_00671 0.47 +0.2 32,362 - BACOVA_00671 0.47 -0.1 32,364 + BACOVA_00671 0.47 -1.0 32,365 - BACOVA_00671 0.48 +0.0 32,376 + BACOVA_00671 0.48 -0.4 32,439 - BACOVA_00671 0.52 +1.1 32,468 + BACOVA_00671 0.54 -0.7 32,541 + BACOVA_00671 0.59 +0.6 32,609 + BACOVA_00671 0.64 +1.0 32,785 + BACOVA_00671 0.75 +0.4 32,786 - BACOVA_00671 0.75 +0.9 32,787 + BACOVA_00671 0.75 +0.6 32,787 + BACOVA_00671 0.75 -1.1 32,898 + BACOVA_00671 0.83 -0.4 32,940 - BACOVA_00671 0.85 +1.7 32,962 + BACOVA_00671 0.87 -1.1 32,982 + BACOVA_00671 0.88 +0.6 32,983 - BACOVA_00671 0.88 +0.9 32,983 - BACOVA_00671 0.88 +0.5 32,988 - BACOVA_00671 0.89 +0.1 33,033 + -0.5 33,034 - +0.7 33,034 - -0.2 33,113 - -1.1 33,113 - -1.2 33,113 - +0.7 33,131 - +0.5 33,145 + -0.5 33,145 + -0.2 33,145 + -0.1 33,157 + -0.1 33,256 + BACOVA_00672 0.12 +0.6 33,256 + BACOVA_00672 0.12 +0.8 33,257 - BACOVA_00672 0.13 +0.4 33,350 - BACOVA_00672 0.24 +0.1 33,364 - BACOVA_00672 0.26 -1.5 33,366 + BACOVA_00672 0.26 +0.3 33,367 - BACOVA_00672 0.26 +0.4 33,399 - BACOVA_00672 0.30 +0.0 33,420 + BACOVA_00672 0.33 +1.6 33,420 + BACOVA_00672 0.33 -0.6 33,604 - BACOVA_00672 0.56 -1.9 33,604 - BACOVA_00672 0.56 -0.4 33,616 + BACOVA_00672 0.57 +0.7 33,616 + BACOVA_00672 0.57 -0.6 33,617 - BACOVA_00672 0.57 -1.5 33,617 - BACOVA_00672 0.57 -0.2 33,624 + BACOVA_00672 0.58 -2.6 33,647 + BACOVA_00672 0.61 -0.6 33,667 - BACOVA_00672 0.64 -0.7 33,709 + BACOVA_00672 0.69 -1.5 33,710 - BACOVA_00672 0.69 +0.6 33,740 - BACOVA_00672 0.73 -1.0 33,740 - BACOVA_00672 0.73 -0.1 33,746 + BACOVA_00672 0.73 -0.9 33,747 - BACOVA_00672 0.74 -0.9 33,760 - BACOVA_00672 0.75 -0.4 33,823 + BACOVA_00672 0.83 +0.4 33,824 - BACOVA_00672 0.83 -0.4 33,824 - BACOVA_00672 0.83 -0.1 33,853 + BACOVA_00672 0.87 -0.0 33,873 + BACOVA_00672 0.89 -1.2 33,874 - BACOVA_00672 0.89 -1.9 33,933 + -0.1 33,933 + +0.9 33,934 - +1.7 33,941 + -2.0 33,954 + +0.5 33,963 + -0.8 33,986 + +0.1 33,987 - -0.8 34,015 + BACOVA_00673 0.10 +0.1 34,016 - BACOVA_00673 0.11 -0.4 34,020 + BACOVA_00673 0.13 -1.2 34,021 - BACOVA_00673 0.14 -0.8 34,033 + BACOVA_00673 0.21 -0.3 34,069 + BACOVA_00673 0.44 -0.1 34,070 - BACOVA_00673 0.45 -0.7 34,070 - BACOVA_00673 0.45 -0.8 34,107 + BACOVA_00673 0.68 -0.2 34,108 - BACOVA_00673 0.69 +0.8 34,109 + BACOVA_00673 0.69 -1.3 34,109 + BACOVA_00673 0.69 -1.0 34,110 - BACOVA_00673 0.70 +0.8 34,114 - BACOVA_00673 0.72 +0.0 34,114 - BACOVA_00673 0.72 +0.1 34,122 - BACOVA_00673 0.77 +0.3 34,122 - BACOVA_00673 0.77 +0.3 34,124 + BACOVA_00673 0.79 -0.3 34,125 - BACOVA_00673 0.79 -2.5 34,125 - BACOVA_00673 0.79 +1.4
Or see this region's nucleotide sequence