Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.101 kb on + strand, within BACOVA_00582 at 17.102 kb on - strand, within BACOVA_00582 at 17.103 kb on + strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.104 kb on - strand, within BACOVA_00582 at 17.231 kb on + strand, within BACOVA_00582 at 17.238 kb on + strand, within BACOVA_00582 at 17.239 kb on - strand, within BACOVA_00582 at 17.244 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.251 kb on - strand, within BACOVA_00582 at 17.258 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.307 kb on - strand, within BACOVA_00582 at 17.312 kb on + strand, within BACOVA_00582 at 17.352 kb on - strand, within BACOVA_00582 at 17.397 kb on + strand, within BACOVA_00582 at 17.398 kb on - strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.413 kb on + strand, within BACOVA_00582 at 17.418 kb on - strand, within BACOVA_00582 at 17.436 kb on + strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.437 kb on - strand, within BACOVA_00582 at 17.475 kb on - strand, within BACOVA_00582 at 17.506 kb on - strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.525 kb on + strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.526 kb on - strand, within BACOVA_00582 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 17,101 + BACOVA_00582 0.56 +1.2 17,101 + BACOVA_00582 0.56 +1.0 17,101 + BACOVA_00582 0.56 +1.6 17,101 + BACOVA_00582 0.56 +0.2 17,101 + BACOVA_00582 0.56 -0.1 17,102 - BACOVA_00582 0.56 -0.6 17,103 + BACOVA_00582 0.56 +0.7 17,104 - BACOVA_00582 0.57 -2.1 17,104 - BACOVA_00582 0.57 +0.3 17,231 + BACOVA_00582 0.62 +0.4 17,238 + BACOVA_00582 0.62 +0.7 17,239 - BACOVA_00582 0.63 -2.2 17,244 - BACOVA_00582 0.63 +0.9 17,251 - BACOVA_00582 0.63 +0.3 17,251 - BACOVA_00582 0.63 +0.6 17,258 - BACOVA_00582 0.63 +0.3 17,307 - BACOVA_00582 0.66 -1.2 17,307 - BACOVA_00582 0.66 -1.2 17,307 - BACOVA_00582 0.66 +0.1 17,312 + BACOVA_00582 0.66 -0.3 17,352 - BACOVA_00582 0.68 +0.2 17,397 + BACOVA_00582 0.69 -0.2 17,398 - BACOVA_00582 0.70 +0.1 17,413 + BACOVA_00582 0.70 -1.1 17,413 + BACOVA_00582 0.70 +0.2 17,418 - BACOVA_00582 0.70 -0.5 17,436 + BACOVA_00582 0.71 +0.2 17,437 - BACOVA_00582 0.71 -1.2 17,437 - BACOVA_00582 0.71 -1.7 17,475 - BACOVA_00582 0.73 -2.1 17,506 - BACOVA_00582 0.74 -0.2 17,525 + BACOVA_00582 0.75 -0.8 17,525 + BACOVA_00582 0.75 +0.9 17,525 + BACOVA_00582 0.75 +0.4 17,526 - BACOVA_00582 0.75 +0.4 17,526 - BACOVA_00582 0.75 -0.7 17,668 + BACOVA_00582 0.81 +1.0 17,669 - BACOVA_00582 0.82 -0.0 17,669 - BACOVA_00582 0.82 +0.3 17,669 - BACOVA_00582 0.82 -1.0 17,669 - BACOVA_00582 0.82 -0.2 17,719 + BACOVA_00582 0.84 -1.9 17,724 + BACOVA_00582 0.84 -1.4 17,783 - BACOVA_00582 0.87 -0.5 17,786 - BACOVA_00582 0.87 -0.4 17,844 - BACOVA_00582 0.89 -0.8 17,848 + BACOVA_00582 0.89 -0.4 17,849 - BACOVA_00582 0.90 +0.4 17,873 - -0.2 17,877 + -1.1 17,877 + -0.6 17,885 + +2.3 17,923 + -0.3 17,923 + -0.9 17,923 + +0.0 17,923 + -1.9 17,943 + +0.0 17,984 - +0.8 18,017 - +0.0 18,083 + +0.1 18,087 + +0.2 18,087 + -1.5 18,088 - -0.1 18,090 - -0.0 18,107 - -0.6 18,107 - +0.4 18,160 + BACOVA_00583 0.12 +1.2 18,179 + BACOVA_00583 0.16 +0.6 18,199 + BACOVA_00583 0.19 -0.4 18,219 + BACOVA_00583 0.23 -0.5 18,243 + BACOVA_00583 0.27 +0.9 18,244 - BACOVA_00583 0.27 +0.0 18,297 - BACOVA_00583 0.36 -0.0 18,297 - BACOVA_00583 0.36 -0.7 18,297 - BACOVA_00583 0.36 -0.2 18,397 - BACOVA_00583 0.54 -0.0 18,488 + BACOVA_00583 0.69 +0.0 18,517 + BACOVA_00583 0.75 -1.4 18,553 + BACOVA_00583 0.81 -0.6 18,554 - BACOVA_00583 0.81 +0.4 18,557 + BACOVA_00583 0.82 -0.2 18,575 + BACOVA_00583 0.85 +1.0 18,576 - BACOVA_00583 0.85 -1.5 18,588 - BACOVA_00583 0.87 -1.6 18,588 - BACOVA_00583 0.87 +0.0 18,622 + -0.6 18,623 - -0.9 18,626 + +0.6 18,667 - -0.4 18,667 - +0.4 18,667 - -0.7 18,705 + -1.1 18,705 + -1.0 18,734 + +0.2 18,743 - -2.9 18,870 + BACOVA_00584 0.21 +1.0 18,870 + BACOVA_00584 0.21 +0.9 18,870 + BACOVA_00584 0.21 +0.2 18,912 + BACOVA_00584 0.24 -0.2 18,928 - BACOVA_00584 0.26 +0.1 18,928 - BACOVA_00584 0.26 -1.3 18,996 + BACOVA_00584 0.32 -0.6 19,001 + BACOVA_00584 0.33 +0.4 19,002 - BACOVA_00584 0.33 +0.0 19,057 - BACOVA_00584 0.38 -1.2 19,071 - BACOVA_00584 0.39 -0.9 19,071 - BACOVA_00584 0.39 +0.8 19,113 + BACOVA_00584 0.43 -0.3 19,114 - BACOVA_00584 0.43 +0.1 19,134 + BACOVA_00584 0.45 +0.4 19,135 - BACOVA_00584 0.45 -0.6 19,148 + BACOVA_00584 0.46 +0.4 19,154 - BACOVA_00584 0.47 -0.3 19,167 - BACOVA_00584 0.48 -0.7 19,179 - BACOVA_00584 0.49 -0.8 19,252 - BACOVA_00584 0.56 -0.4 19,326 + BACOVA_00584 0.62 -0.1 19,505 - BACOVA_00584 0.79 +1.0 19,530 + BACOVA_00584 0.81 -0.6 19,542 + BACOVA_00584 0.82 -0.7 19,570 + BACOVA_00584 0.85 -0.4 19,572 + BACOVA_00584 0.85 +0.4 19,573 - BACOVA_00584 0.85 -0.5 19,573 - BACOVA_00584 0.85 +0.5 19,576 - BACOVA_00584 0.85 -0.4
Or see this region's nucleotide sequence