Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00275

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00274 and BACOVA_00275 are separated by 11 nucleotidesBACOVA_00275 and BACOVA_00276 are separated by 183 nucleotides BACOVA_00274: BACOVA_00274 - N-acylglucosamine 2-epimerase, at 528,734 to 529,930 _00274 BACOVA_00275: BACOVA_00275 - dihydrodipicolinate synthetase family, at 529,942 to 530,706 _00275 BACOVA_00276: BACOVA_00276 - hypothetical protein, at 530,890 to 532,443 _00276 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.946 kb on - strand, within BACOVA_00274at 528.969 kb on + strand, within BACOVA_00274at 528.976 kb on - strand, within BACOVA_00274at 529.032 kb on + strand, within BACOVA_00274at 529.072 kb on + strand, within BACOVA_00274at 529.201 kb on + strand, within BACOVA_00274at 529.234 kb on + strand, within BACOVA_00274at 529.242 kb on - strand, within BACOVA_00274at 529.274 kb on + strand, within BACOVA_00274at 529.318 kb on + strand, within BACOVA_00274at 529.319 kb on - strand, within BACOVA_00274at 529.383 kb on - strand, within BACOVA_00274at 529.395 kb on - strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.430 kb on - strand, within BACOVA_00274at 529.436 kb on - strand, within BACOVA_00274at 529.473 kb on + strand, within BACOVA_00274at 529.520 kb on - strand, within BACOVA_00274at 529.553 kb on + strand, within BACOVA_00274at 529.627 kb on - strand, within BACOVA_00274at 529.630 kb on + strand, within BACOVA_00274at 529.630 kb on + strand, within BACOVA_00274at 529.631 kb on - strand, within BACOVA_00274at 529.654 kb on - strand, within BACOVA_00274at 529.713 kb on - strand, within BACOVA_00274at 529.720 kb on + strand, within BACOVA_00274at 529.723 kb on - strand, within BACOVA_00274at 529.777 kb on + strand, within BACOVA_00274at 529.777 kb on + strand, within BACOVA_00274at 529.778 kb on - strand, within BACOVA_00274at 529.810 kb on + strand, within BACOVA_00274at 529.811 kb on - strandat 529.811 kb on - strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.813 kb on - strandat 529.814 kb on + strandat 529.814 kb on + strandat 529.814 kb on + strandat 529.815 kb on - strandat 529.816 kb on + strandat 529.831 kb on + strandat 529.842 kb on + strandat 529.843 kb on - strandat 529.876 kb on + strandat 529.877 kb on - strandat 529.887 kb on + strandat 529.887 kb on + strandat 529.892 kb on - strandat 529.894 kb on + strandat 529.895 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.909 kb on + strandat 529.910 kb on - strandat 529.911 kb on + strandat 529.912 kb on - strandat 529.912 kb on - strandat 529.930 kb on + strandat 529.930 kb on + strandat 530.091 kb on + strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.212 kb on - strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.315 kb on + strand, within BACOVA_00275at 530.316 kb on - strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.356 kb on - strand, within BACOVA_00275at 530.358 kb on - strand, within BACOVA_00275at 530.382 kb on + strand, within BACOVA_00275at 530.419 kb on + strand, within BACOVA_00275at 530.457 kb on - strand, within BACOVA_00275at 530.515 kb on + strand, within BACOVA_00275at 530.630 kb on - strandat 530.634 kb on + strandat 530.634 kb on + strandat 530.685 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.708 kb on + strandat 530.708 kb on + strandat 530.709 kb on - strandat 530.709 kb on - strandat 530.758 kb on + strandat 530.764 kb on + strandat 530.774 kb on + strandat 530.793 kb on - strandat 530.862 kb on - strandat 530.887 kb on + strandat 530.891 kb on + strandat 530.891 kb on + strandat 530.920 kb on - strandat 530.923 kb on + strandat 530.923 kb on + strandat 530.924 kb on - strandat 531.127 kb on + strand, within BACOVA_00276at 531.127 kb on + strand, within BACOVA_00276at 531.214 kb on + strand, within BACOVA_00276at 531.263 kb on + strand, within BACOVA_00276at 531.264 kb on - strand, within BACOVA_00276at 531.360 kb on + strand, within BACOVA_00276at 531.383 kb on + strand, within BACOVA_00276at 531.427 kb on + strand, within BACOVA_00276at 531.427 kb on + strand, within BACOVA_00276at 531.428 kb on - strand, within BACOVA_00276at 531.607 kb on + strand, within BACOVA_00276at 531.607 kb on + strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.643 kb on + strand, within BACOVA_00276at 531.644 kb on - strand, within BACOVA_00276

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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528,946 - BACOVA_00274 0.18 -0.5
528,969 + BACOVA_00274 0.20 -0.2
528,976 - BACOVA_00274 0.20 +1.2
529,032 + BACOVA_00274 0.25 +0.6
529,072 + BACOVA_00274 0.28 -0.0
529,201 + BACOVA_00274 0.39 -0.6
529,234 + BACOVA_00274 0.42 -0.7
529,242 - BACOVA_00274 0.42 -2.4
529,274 + BACOVA_00274 0.45 +0.2
529,318 + BACOVA_00274 0.49 -1.0
529,319 - BACOVA_00274 0.49 -0.3
529,383 - BACOVA_00274 0.54 +0.3
529,395 - BACOVA_00274 0.55 -1.0
529,429 + BACOVA_00274 0.58 -0.4
529,429 + BACOVA_00274 0.58 -1.3
529,429 + BACOVA_00274 0.58 -1.8
529,430 - BACOVA_00274 0.58 -2.6
529,436 - BACOVA_00274 0.59 -0.2
529,473 + BACOVA_00274 0.62 +0.7
529,520 - BACOVA_00274 0.66 -0.4
529,553 + BACOVA_00274 0.68 +1.3
529,627 - BACOVA_00274 0.75 -0.6
529,630 + BACOVA_00274 0.75 +0.7
529,630 + BACOVA_00274 0.75 +1.1
529,631 - BACOVA_00274 0.75 -0.2
529,654 - BACOVA_00274 0.77 -0.1
529,713 - BACOVA_00274 0.82 -0.6
529,720 + BACOVA_00274 0.82 +0.3
529,723 - BACOVA_00274 0.83 -0.8
529,777 + BACOVA_00274 0.87 +0.9
529,777 + BACOVA_00274 0.87 -0.2
529,778 - BACOVA_00274 0.87 +0.3
529,810 + BACOVA_00274 0.90 -1.0
529,811 - +1.0
529,811 - +0.3
529,812 + -1.9
529,812 + +0.5
529,812 + +0.6
529,812 + -0.9
529,812 + -1.3
529,812 + -1.7
529,813 - -2.5
529,814 + -0.5
529,814 + +1.8
529,814 + -1.7
529,815 - -0.2
529,816 + +1.5
529,831 + -0.7
529,842 + +1.5
529,843 - -0.1
529,876 + -0.3
529,877 - +0.2
529,887 + -0.7
529,887 + +0.4
529,892 - +0.1
529,894 + -0.5
529,895 - -0.8
529,908 - +0.6
529,908 - -1.3
529,908 - +0.2
529,909 + -0.3
529,910 - +0.6
529,911 + +0.1
529,912 - -1.7
529,912 - -0.2
529,930 + +0.7
529,930 + -0.1
530,091 + BACOVA_00275 0.19 +1.1
530,191 - BACOVA_00275 0.33 +1.2
530,191 - BACOVA_00275 0.33 +1.3
530,212 - BACOVA_00275 0.35 -1.0
530,295 + BACOVA_00275 0.46 -2.6
530,295 + BACOVA_00275 0.46 -1.3
530,315 + BACOVA_00275 0.49 +0.9
530,316 - BACOVA_00275 0.49 +0.2
530,355 + BACOVA_00275 0.54 +0.5
530,355 + BACOVA_00275 0.54 +0.3
530,356 - BACOVA_00275 0.54 -1.9
530,358 - BACOVA_00275 0.54 +0.4
530,382 + BACOVA_00275 0.58 +0.6
530,419 + BACOVA_00275 0.62 -0.5
530,457 - BACOVA_00275 0.67 +0.9
530,515 + BACOVA_00275 0.75 +0.5
530,630 - +1.7
530,634 + -1.6
530,634 + -0.2
530,685 + +0.7
530,706 + +2.3
530,706 + -2.7
530,706 + +1.9
530,708 + -0.0
530,708 + +0.6
530,709 - -0.3
530,709 - -0.1
530,758 + -1.1
530,764 + +0.3
530,774 + -0.5
530,793 - -0.2
530,862 - -0.3
530,887 + -0.6
530,891 + +0.0
530,891 + -2.3
530,920 - -1.1
530,923 + -0.4
530,923 + -0.7
530,924 - -1.3
531,127 + BACOVA_00276 0.15 -0.3
531,127 + BACOVA_00276 0.15 +1.6
531,214 + BACOVA_00276 0.21 +0.9
531,263 + BACOVA_00276 0.24 +0.8
531,264 - BACOVA_00276 0.24 -1.6
531,360 + BACOVA_00276 0.30 +0.4
531,383 + BACOVA_00276 0.32 -2.3
531,427 + BACOVA_00276 0.35 -0.2
531,427 + BACOVA_00276 0.35 -1.1
531,428 - BACOVA_00276 0.35 +0.3
531,607 + BACOVA_00276 0.46 -0.3
531,607 + BACOVA_00276 0.46 +0.3
531,608 - BACOVA_00276 0.46 -0.3
531,608 - BACOVA_00276 0.46 +0.2
531,609 + BACOVA_00276 0.46 -0.8
531,609 + BACOVA_00276 0.46 +0.9
531,609 + BACOVA_00276 0.46 +1.6
531,643 + BACOVA_00276 0.48 -1.1
531,644 - BACOVA_00276 0.49 -0.1

Or see this region's nucleotide sequence