Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00263

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00261 and BACOVA_00262 are separated by 185 nucleotidesBACOVA_00262 and BACOVA_00263 are separated by 77 nucleotidesBACOVA_00263 and BACOVA_00264 are separated by 88 nucleotides BACOVA_00261: BACOVA_00261 - glycosyl hydrolase family 67 middle domain protein, at 49,320 to 51,431 _00261 BACOVA_00262: BACOVA_00262 - hypothetical protein, at 51,617 to 51,799 _00262 BACOVA_00263: BACOVA_00263 - hypothetical protein, at 51,877 to 51,999 _00263 BACOVA_00264: BACOVA_00264 - IPT/TIG domain protein, at 52,088 to 53,485 _00264 Position (kb) 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 50.880 kb on + strand, within BACOVA_00261at 50.881 kb on - strand, within BACOVA_00261at 50.937 kb on + strand, within BACOVA_00261at 50.937 kb on + strand, within BACOVA_00261at 50.945 kb on + strand, within BACOVA_00261at 50.945 kb on + strand, within BACOVA_00261at 50.946 kb on - strand, within BACOVA_00261at 50.983 kb on + strand, within BACOVA_00261at 50.984 kb on + strand, within BACOVA_00261at 50.984 kb on - strand, within BACOVA_00261at 51.012 kb on + strand, within BACOVA_00261at 51.012 kb on + strand, within BACOVA_00261at 51.013 kb on - strand, within BACOVA_00261at 51.032 kb on + strand, within BACOVA_00261at 51.067 kb on - strand, within BACOVA_00261at 51.136 kb on + strand, within BACOVA_00261at 51.137 kb on - strand, within BACOVA_00261at 51.207 kb on + strand, within BACOVA_00261at 51.208 kb on - strand, within BACOVA_00261at 51.242 kb on + strandat 51.372 kb on - strandat 51.408 kb on - strandat 51.421 kb on + strandat 51.429 kb on + strandat 51.429 kb on + strandat 51.430 kb on - strandat 51.430 kb on - strandat 51.461 kb on - strandat 51.467 kb on + strandat 51.468 kb on - strandat 51.479 kb on - strandat 51.500 kb on + strandat 51.534 kb on - strandat 51.541 kb on - strandat 51.541 kb on - strandat 51.547 kb on + strandat 51.550 kb on - strandat 51.550 kb on - strandat 51.555 kb on - strandat 51.555 kb on - strandat 51.618 kb on + strandat 51.628 kb on + strandat 51.649 kb on + strand, within BACOVA_00262at 51.653 kb on + strand, within BACOVA_00262at 51.683 kb on + strand, within BACOVA_00262at 51.684 kb on - strand, within BACOVA_00262at 51.684 kb on - strand, within BACOVA_00262at 51.684 kb on - strand, within BACOVA_00262at 51.710 kb on + strand, within BACOVA_00262at 51.710 kb on + strand, within BACOVA_00262at 51.711 kb on - strand, within BACOVA_00262at 51.711 kb on - strand, within BACOVA_00262at 51.711 kb on - strand, within BACOVA_00262at 51.738 kb on - strand, within BACOVA_00262at 51.756 kb on + strand, within BACOVA_00262at 51.796 kb on - strandat 51.814 kb on - strandat 51.818 kb on - strandat 51.840 kb on - strandat 51.871 kb on + strandat 51.912 kb on - strand, within BACOVA_00263at 51.937 kb on - strand, within BACOVA_00263at 51.964 kb on + strand, within BACOVA_00263at 51.971 kb on + strand, within BACOVA_00263at 51.992 kb on + strandat 52.000 kb on + strandat 52.000 kb on + strandat 52.001 kb on - strandat 52.003 kb on - strandat 52.003 kb on - strandat 52.012 kb on - strandat 52.012 kb on - strandat 52.043 kb on - strandat 52.043 kb on - strandat 52.087 kb on + strandat 52.093 kb on - strandat 52.114 kb on - strandat 52.158 kb on + strandat 52.245 kb on + strand, within BACOVA_00264at 52.249 kb on - strand, within BACOVA_00264at 52.277 kb on - strand, within BACOVA_00264at 52.290 kb on + strand, within BACOVA_00264at 52.296 kb on + strand, within BACOVA_00264at 52.296 kb on + strand, within BACOVA_00264at 52.297 kb on - strand, within BACOVA_00264at 52.298 kb on + strand, within BACOVA_00264at 52.327 kb on + strand, within BACOVA_00264at 52.353 kb on - strand, within BACOVA_00264at 52.374 kb on + strand, within BACOVA_00264at 52.374 kb on + strand, within BACOVA_00264at 52.429 kb on - strand, within BACOVA_00264at 52.429 kb on - strand, within BACOVA_00264at 52.429 kb on - strand, within BACOVA_00264at 52.504 kb on + strand, within BACOVA_00264at 52.505 kb on - strand, within BACOVA_00264at 52.508 kb on + strand, within BACOVA_00264at 52.509 kb on - strand, within BACOVA_00264at 52.509 kb on - strand, within BACOVA_00264at 52.638 kb on - strand, within BACOVA_00264at 52.704 kb on + strand, within BACOVA_00264at 52.704 kb on + strand, within BACOVA_00264at 52.704 kb on + strand, within BACOVA_00264at 52.705 kb on - strand, within BACOVA_00264at 52.724 kb on - strand, within BACOVA_00264at 52.750 kb on + strand, within BACOVA_00264at 52.757 kb on - strand, within BACOVA_00264at 52.770 kb on + strand, within BACOVA_00264at 52.771 kb on - strand, within BACOVA_00264at 52.802 kb on - strand, within BACOVA_00264at 52.802 kb on - strand, within BACOVA_00264at 52.811 kb on + strand, within BACOVA_00264at 52.858 kb on + strand, within BACOVA_00264at 52.914 kb on - strand, within BACOVA_00264at 52.914 kb on - strand, within BACOVA_00264at 52.914 kb on - strand, within BACOVA_00264at 52.915 kb on + strand, within BACOVA_00264at 52.916 kb on - strand, within BACOVA_00264at 52.916 kb on - strand, within BACOVA_00264at 52.934 kb on - strand, within BACOVA_00264at 52.934 kb on - strand, within BACOVA_00264at 52.934 kb on - strand, within BACOVA_00264at 52.937 kb on + strand, within BACOVA_00264at 52.984 kb on - strand, within BACOVA_00264at 52.984 kb on - strand, within BACOVA_00264

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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50,880 + BACOVA_00261 0.74 +0.9
50,881 - BACOVA_00261 0.74 -0.7
50,937 + BACOVA_00261 0.77 -0.8
50,937 + BACOVA_00261 0.77 -0.8
50,945 + BACOVA_00261 0.77 -0.1
50,945 + BACOVA_00261 0.77 -1.0
50,946 - BACOVA_00261 0.77 -0.4
50,983 + BACOVA_00261 0.79 -1.5
50,984 + BACOVA_00261 0.79 +0.2
50,984 - BACOVA_00261 0.79 -1.4
51,012 + BACOVA_00261 0.80 +0.8
51,012 + BACOVA_00261 0.80 +0.2
51,013 - BACOVA_00261 0.80 -0.4
51,032 + BACOVA_00261 0.81 +0.2
51,067 - BACOVA_00261 0.83 -1.6
51,136 + BACOVA_00261 0.86 -1.7
51,137 - BACOVA_00261 0.86 -1.0
51,207 + BACOVA_00261 0.89 +0.2
51,208 - BACOVA_00261 0.89 -1.0
51,242 + +0.4
51,372 - -0.5
51,408 - -0.5
51,421 + +0.2
51,429 + +0.9
51,429 + -0.2
51,430 - +1.1
51,430 - +1.2
51,461 - -0.0
51,467 + -3.8
51,468 - +0.3
51,479 - -1.6
51,500 + -3.2
51,534 - -0.8
51,541 - +0.4
51,541 - -1.6
51,547 + -1.2
51,550 - -0.6
51,550 - +0.9
51,555 - -0.6
51,555 - -0.9
51,618 + -0.5
51,628 + -0.6
51,649 + BACOVA_00262 0.17 -1.4
51,653 + BACOVA_00262 0.20 -0.7
51,683 + BACOVA_00262 0.36 -0.8
51,684 - BACOVA_00262 0.37 -0.5
51,684 - BACOVA_00262 0.37 +0.5
51,684 - BACOVA_00262 0.37 +0.6
51,710 + BACOVA_00262 0.51 -0.4
51,710 + BACOVA_00262 0.51 -2.6
51,711 - BACOVA_00262 0.51 +0.2
51,711 - BACOVA_00262 0.51 -0.2
51,711 - BACOVA_00262 0.51 +0.4
51,738 - BACOVA_00262 0.66 -0.6
51,756 + BACOVA_00262 0.76 -1.8
51,796 - +0.5
51,814 - -0.6
51,818 - -0.5
51,840 - +0.4
51,871 + -0.7
51,912 - BACOVA_00263 0.28 +0.6
51,937 - BACOVA_00263 0.49 +2.2
51,964 + BACOVA_00263 0.71 -0.1
51,971 + BACOVA_00263 0.76 +0.8
51,992 + +1.3
52,000 + -1.4
52,000 + +0.4
52,001 - -0.2
52,003 - +1.2
52,003 - +0.2
52,012 - +0.6
52,012 - -0.4
52,043 - +0.6
52,043 - -0.2
52,087 + +0.0
52,093 - +0.6
52,114 - +1.3
52,158 + -1.1
52,245 + BACOVA_00264 0.11 -1.8
52,249 - BACOVA_00264 0.12 -0.6
52,277 - BACOVA_00264 0.14 -0.3
52,290 + BACOVA_00264 0.14 +0.6
52,296 + BACOVA_00264 0.15 -1.1
52,296 + BACOVA_00264 0.15 -0.8
52,297 - BACOVA_00264 0.15 -0.7
52,298 + BACOVA_00264 0.15 -0.0
52,327 + BACOVA_00264 0.17 -0.5
52,353 - BACOVA_00264 0.19 +0.4
52,374 + BACOVA_00264 0.20 +1.0
52,374 + BACOVA_00264 0.20 -0.8
52,429 - BACOVA_00264 0.24 +0.4
52,429 - BACOVA_00264 0.24 +0.3
52,429 - BACOVA_00264 0.24 -1.2
52,504 + BACOVA_00264 0.30 -1.3
52,505 - BACOVA_00264 0.30 +0.1
52,508 + BACOVA_00264 0.30 +0.8
52,509 - BACOVA_00264 0.30 -0.5
52,509 - BACOVA_00264 0.30 -0.6
52,638 - BACOVA_00264 0.39 +0.4
52,704 + BACOVA_00264 0.44 -0.6
52,704 + BACOVA_00264 0.44 +0.6
52,704 + BACOVA_00264 0.44 +0.7
52,705 - BACOVA_00264 0.44 -0.2
52,724 - BACOVA_00264 0.45 +1.0
52,750 + BACOVA_00264 0.47 -0.9
52,757 - BACOVA_00264 0.48 +1.5
52,770 + BACOVA_00264 0.49 -0.0
52,771 - BACOVA_00264 0.49 +0.4
52,802 - BACOVA_00264 0.51 -0.6
52,802 - BACOVA_00264 0.51 -0.4
52,811 + BACOVA_00264 0.52 -1.5
52,858 + BACOVA_00264 0.55 -0.7
52,914 - BACOVA_00264 0.59 +0.2
52,914 - BACOVA_00264 0.59 +0.5
52,914 - BACOVA_00264 0.59 -1.0
52,915 + BACOVA_00264 0.59 +0.6
52,916 - BACOVA_00264 0.59 -0.6
52,916 - BACOVA_00264 0.59 +0.1
52,934 - BACOVA_00264 0.61 +0.6
52,934 - BACOVA_00264 0.61 +0.6
52,934 - BACOVA_00264 0.61 +0.1
52,937 + BACOVA_00264 0.61 -0.2
52,984 - BACOVA_00264 0.64 +1.0
52,984 - BACOVA_00264 0.64 -1.4

Or see this region's nucleotide sequence