Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF992 and GFF993 are separated by 13 nucleotides GFF993 and GFF994 overlap by 4 nucleotides GFF994 and GFF995 are separated by 14 nucleotides
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
GFF993 - Transglutaminase-like domain, at 732,150 to 732,845
GFF993
GFF994 - probable hydrolase, at 732,842 to 733,708
GFF994
GFF995 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 733,723 to 735,237
GFF995
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1 at 731.866 kb on + strand, within GFF992 at 731.866 kb on - strand, within GFF992 at 731.870 kb on + strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 732.149 kb on + strand at 732.297 kb on + strand, within GFF993 at 732.300 kb on + strand, within GFF993 at 732.325 kb on - strand, within GFF993 at 732.513 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 733.232 kb on + strand, within GFF994 at 733.315 kb on + strand, within GFF994 at 733.316 kb on - strand, within GFF994 at 733.317 kb on - strand, within GFF994 at 733.777 kb on + strand at 733.778 kb on - strand at 733.831 kb on + strand at 733.927 kb on + strand, within GFF995 at 733.928 kb on - strand, within GFF995 at 733.928 kb on - strand, within GFF995 at 734.012 kb on - strand, within GFF995 at 734.104 kb on + strand, within GFF995 at 734.633 kb on - strand, within GFF995
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 731,866 + GFF992 0.69 -2.0 731,866 - GFF992 0.69 +0.1 731,870 + GFF992 0.70 -0.9 731,871 - GFF992 0.70 -0.5 731,871 - GFF992 0.70 -0.6 731,871 - GFF992 0.70 +0.2 732,149 + -0.1 732,297 + GFF993 0.21 -0.2 732,300 + GFF993 0.22 -0.1 732,325 - GFF993 0.25 +1.2 732,513 + GFF993 0.52 -0.2 732,699 + GFF993 0.79 -0.1 732,699 + GFF993 0.79 +0.2 732,700 - GFF993 0.79 +0.0 732,700 - GFF993 0.79 +0.5 732,700 - GFF993 0.79 +0.1 732,700 - GFF993 0.79 +0.5 732,700 - GFF993 0.79 +0.2 733,232 + GFF994 0.45 +0.3 733,315 + GFF994 0.55 +0.7 733,316 - GFF994 0.55 +1.7 733,317 - GFF994 0.55 +1.5 733,777 + +0.4 733,778 - -0.9 733,831 + +0.0 733,927 + GFF995 0.13 +0.0 733,928 - GFF995 0.14 -0.0 733,928 - GFF995 0.14 +1.1 734,012 - GFF995 0.19 -0.9 734,104 + GFF995 0.25 -0.1 734,633 - GFF995 0.60 -0.2
Or see this region's nucleotide sequence