Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 overlap by 4 nucleotides GFF991 and GFF992 are separated by 24 nucleotides
GFF989 - metallo-beta-lactamase family protein, at 729,259 to 730,326
GFF989
GFF990 - Phenylacetic acid degradation-related protein, at 730,323 to 730,799
GFF990
GFF991 - hypothetical protein, at 730,796 to 731,230
GFF991
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
Position (kb) 730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 729.365 kb on - strand at 729.647 kb on - strand, within GFF989 at 729.726 kb on + strand, within GFF989 at 730.142 kb on - strand, within GFF989 at 730.172 kb on - strand, within GFF989 at 730.396 kb on - strand, within GFF990 at 730.573 kb on + strand, within GFF990 at 730.609 kb on - strand, within GFF990 at 730.660 kb on - strand, within GFF990 at 730.701 kb on + strand, within GFF990 at 730.746 kb on + strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.755 kb on - strand at 730.772 kb on - strand at 731.019 kb on - strand, within GFF991 at 731.079 kb on - strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.109 kb on - strand, within GFF991 at 731.266 kb on + strand at 731.266 kb on + strand at 731.267 kb on - strand at 731.374 kb on - strand, within GFF992
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 729,365 - +0.6 729,647 - GFF989 0.36 -0.4 729,726 + GFF989 0.44 -0.1 730,142 - GFF989 0.83 +0.1 730,172 - GFF989 0.85 -0.4 730,396 - GFF990 0.15 -1.3 730,573 + GFF990 0.52 -0.3 730,609 - GFF990 0.60 -0.4 730,660 - GFF990 0.71 +0.3 730,701 + GFF990 0.79 -1.6 730,746 + GFF990 0.89 +0.1 730,747 - GFF990 0.89 +0.4 730,747 - GFF990 0.89 +0.1 730,747 - GFF990 0.89 -2.2 730,747 - GFF990 0.89 -0.1 730,755 - +0.6 730,772 - -0.2 731,019 - GFF991 0.51 +0.4 731,079 - GFF991 0.65 -0.3 731,108 + GFF991 0.72 -0.5 731,108 + GFF991 0.72 +0.1 731,108 + GFF991 0.72 -0.9 731,109 - GFF991 0.72 +0.1 731,266 + -0.1 731,266 + +0.0 731,267 - +1.1 731,374 - GFF992 0.13 -0.4
Or see this region's nucleotide sequence