Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF803 and GFF804 are separated by 4 nucleotides GFF804 and GFF805 are separated by 9 nucleotides
GFF803 - PQQ-dependent oxidoreductase, gdhB family, at 497,988 to 499,121
GFF803
GFF804 - FIG00347536: hypothetical protein, at 499,126 to 500,454
GFF804
GFF805 - ABC transporter ATP-binding protein, at 500,464 to 501,465
GFF805
Position (kb) 499
500
501 Strain fitness (log2 ratio) -2
-1
0
1 at 498.507 kb on + strand, within GFF803 at 498.753 kb on + strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.787 kb on - strand, within GFF803 at 498.787 kb on - strand, within GFF803 at 499.204 kb on + strand at 499.405 kb on + strand, within GFF804 at 499.405 kb on + strand, within GFF804 at 499.405 kb on + strand, within GFF804 at 499.406 kb on - strand, within GFF804 at 499.408 kb on + strand, within GFF804 at 499.408 kb on + strand, within GFF804 at 499.408 kb on + strand, within GFF804 at 500.224 kb on + strand, within GFF804 at 500.224 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.225 kb on - strand, within GFF804 at 500.332 kb on + strand at 500.333 kb on - strand at 500.452 kb on + strand at 500.471 kb on - strand at 500.582 kb on - strand, within GFF805 at 500.587 kb on + strand, within GFF805 at 500.638 kb on + strand, within GFF805 at 500.639 kb on - strand, within GFF805 at 500.789 kb on - strand, within GFF805 at 500.815 kb on + strand, within GFF805 at 501.232 kb on + strand, within GFF805 at 501.233 kb on - strand, within GFF805 at 501.352 kb on + strand, within GFF805 at 501.352 kb on + strand, within GFF805
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 498,507 + GFF803 0.46 -0.7 498,753 + GFF803 0.67 -0.9 498,754 - GFF803 0.68 +0.0 498,754 - GFF803 0.68 -0.4 498,754 - GFF803 0.68 -1.4 498,754 - GFF803 0.68 -1.9 498,754 - GFF803 0.68 -1.5 498,787 - GFF803 0.70 -0.4 498,787 - GFF803 0.70 -1.9 499,204 + +0.5 499,405 + GFF804 0.21 +0.3 499,405 + GFF804 0.21 -0.5 499,405 + GFF804 0.21 +0.9 499,406 - GFF804 0.21 +0.3 499,408 + GFF804 0.21 -0.3 499,408 + GFF804 0.21 +0.1 499,408 + GFF804 0.21 +0.1 500,224 + GFF804 0.83 +0.4 500,224 - GFF804 0.83 +1.2 500,225 - GFF804 0.83 +1.2 500,225 - GFF804 0.83 +0.4 500,225 - GFF804 0.83 +0.0 500,332 + +0.3 500,333 - -0.1 500,452 + -0.1 500,471 - +0.6 500,582 - GFF805 0.12 +0.6 500,587 + GFF805 0.12 -1.3 500,638 + GFF805 0.17 -0.4 500,639 - GFF805 0.17 -0.3 500,789 - GFF805 0.32 +0.3 500,815 + GFF805 0.35 +0.4 501,232 + GFF805 0.77 +0.5 501,233 - GFF805 0.77 -0.1 501,352 + GFF805 0.89 -0.6 501,352 + GFF805 0.89 -0.3
Or see this region's nucleotide sequence