Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF766 and GFF767 are separated by 23 nucleotides GFF767 and GFF768 are separated by 0 nucleotides GFF768 and GFF769 are separated by 143 nucleotides
GFF766 - Virulence factor mviM, at 459,676 to 460,407
GFF766
GFF767 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 460,431 to 461,015
GFF767
GFF768 - Peptide chain release factor 3, at 461,016 to 462,635
GFF768
GFF769 - Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases, at 462,779 to 464,047
GFF769
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.118 kb on + strand, within GFF766 at 460.274 kb on + strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.746 kb on + strand, within GFF767 at 460.746 kb on + strand, within GFF767 at 460.747 kb on - strand, within GFF767 at 460.977 kb on + strand at 460.977 kb on + strand at 461.242 kb on + strand, within GFF768 at 461.242 kb on + strand, within GFF768 at 461.243 kb on - strand, within GFF768 at 461.275 kb on + strand, within GFF768 at 461.276 kb on - strand, within GFF768 at 461.276 kb on - strand, within GFF768 at 461.276 kb on - strand, within GFF768 at 462.343 kb on + strand, within GFF768 at 462.344 kb on - strand, within GFF768 at 462.344 kb on - strand, within GFF768 at 462.635 kb on + strand at 462.635 kb on + strand at 462.635 kb on + strand at 462.635 kb on + strand at 462.636 kb on - strand at 462.636 kb on - strand at 462.636 kb on - strand at 462.771 kb on + strand at 462.772 kb on - strand at 462.778 kb on + strand at 462.779 kb on - strand at 462.779 kb on - strand at 462.779 kb on - strand at 462.929 kb on + strand, within GFF769 at 462.929 kb on + strand, within GFF769 at 462.929 kb on + strand, within GFF769 at 462.930 kb on - strand, within GFF769 at 462.930 kb on - strand, within GFF769 at 462.930 kb on - strand, within GFF769 at 462.930 kb on - strand, within GFF769 at 462.930 kb on - strand, within GFF769 at 463.520 kb on + strand, within GFF769 at 463.520 kb on + strand, within GFF769 at 463.521 kb on - strand, within GFF769 at 463.521 kb on - strand, within GFF769 at 463.521 kb on - strand, within GFF769 at 463.521 kb on - strand, within GFF769 at 463.521 kb on - strand, within GFF769
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 460,118 + GFF766 0.60 +0.0 460,274 + GFF766 0.82 -0.1 460,275 - GFF766 0.82 -0.8 460,275 - GFF766 0.82 -0.6 460,275 - GFF766 0.82 -0.2 460,275 - GFF766 0.82 -0.1 460,408 + -0.3 460,408 + -0.6 460,408 + -0.2 460,408 + +0.0 460,408 + -0.6 460,409 - +0.1 460,409 - -0.8 460,409 - -0.1 460,409 - -1.2 460,409 - +0.6 460,746 + GFF767 0.54 -2.7 460,746 + GFF767 0.54 -2.1 460,747 - GFF767 0.54 -0.8 460,977 + -1.2 460,977 + -0.5 461,242 + GFF768 0.14 -0.2 461,242 + GFF768 0.14 -1.3 461,243 - GFF768 0.14 +0.7 461,275 + GFF768 0.16 -0.8 461,276 - GFF768 0.16 -0.4 461,276 - GFF768 0.16 +0.0 461,276 - GFF768 0.16 -0.8 462,343 + GFF768 0.82 -0.1 462,344 - GFF768 0.82 -0.2 462,344 - GFF768 0.82 +0.1 462,635 + +0.1 462,635 + +0.6 462,635 + +0.1 462,635 + +0.1 462,636 - +0.7 462,636 - +0.1 462,636 - -0.4 462,771 + +0.1 462,772 - -0.8 462,778 + -0.3 462,779 - -0.2 462,779 - -0.5 462,779 - -0.5 462,929 + GFF769 0.12 -0.1 462,929 + GFF769 0.12 -0.7 462,929 + GFF769 0.12 -0.1 462,930 - GFF769 0.12 +1.8 462,930 - GFF769 0.12 -0.2 462,930 - GFF769 0.12 -0.1 462,930 - GFF769 0.12 -0.2 462,930 - GFF769 0.12 -1.2 463,520 + GFF769 0.58 +0.2 463,520 + GFF769 0.58 -0.4 463,521 - GFF769 0.58 +1.2 463,521 - GFF769 0.58 +1.0 463,521 - GFF769 0.58 -1.8 463,521 - GFF769 0.58 +0.1 463,521 - GFF769 0.58 -0.7
Or see this region's nucleotide sequence