Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF724 and GFF725 are separated by 120 nucleotides GFF725 and GFF726 are separated by 9 nucleotides GFF726 and GFF727 are separated by 89 nucleotides
GFF724 - Ornithine cyclodeaminase (EC 4.3.1.12), at 404,152 to 405,231
GFF724
GFF725 - Transcriptional regulator, AsnC family, at 405,352 to 405,777
GFF725
GFF726 - Enoyl-CoA hydratase (EC 4.2.1.17), at 405,787 to 406,629
GFF726
GFF727 - hypothetical protein, at 406,719 to 406,997
GFF727
Position (kb) 405
406 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 404.996 kb on + strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 405.008 kb on + strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.105 kb on - strand, within GFF724 at 405.280 kb on + strand at 405.280 kb on + strand at 405.763 kb on + strand at 405.764 kb on - strand at 405.775 kb on + strand at 406.075 kb on + strand, within GFF726 at 406.075 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.364 kb on + strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.670 kb on + strand at 406.671 kb on - strand at 406.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 404,996 + GFF724 0.78 -2.7 404,996 + GFF724 0.78 -3.4 404,997 - GFF724 0.78 -6.0 404,997 - GFF724 0.78 -3.6 404,997 - GFF724 0.78 -3.8 404,997 - GFF724 0.78 -2.2 404,997 - GFF724 0.78 -4.7 405,008 + GFF724 0.79 -0.1 405,009 - GFF724 0.79 -2.5 405,009 - GFF724 0.79 -4.4 405,105 - GFF724 0.88 -4.1 405,280 + -5.6 405,280 + -6.0 405,763 + -3.6 405,764 - -2.7 405,775 + -0.9 406,075 + GFF726 0.34 +0.0 406,075 + GFF726 0.34 +0.1 406,076 + GFF726 0.34 +0.6 406,076 + GFF726 0.34 +0.7 406,076 + GFF726 0.34 +0.0 406,077 - GFF726 0.34 +1.8 406,077 - GFF726 0.34 -0.2 406,364 + GFF726 0.68 +0.2 406,365 - GFF726 0.69 -0.0 406,365 - GFF726 0.69 +0.8 406,365 - GFF726 0.69 -0.5 406,670 + -0.2 406,671 - -0.0 406,726 + -0.2
Or see this region's nucleotide sequence