Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5578

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,588,505	-		GFF5576	0.72	-1.2
2,588,863	+		GFF5577	0.42	-0.8
2,588,947	+		GFF5577	0.75	-0.5
2,588,947	+		GFF5577	0.75	-1.3
2,588,947	+		GFF5577	0.75	-1.4
2,588,948	-		GFF5577	0.75	-0.1
2,589,015	+				-0.5
2,589,015	+				-0.2
2,589,015	+				-0.4
2,589,015	+				+0.2
2,589,015	+				-1.7
2,589,015	+				+0.0
2,589,015	+				-0.8
2,589,015	+				-0.7
2,589,015	+				-0.1
2,589,015	+				+0.5
2,589,015	+				-0.7
2,589,016	-				-0.2
2,589,016	-				+0.1
2,589,016	-				-0.7
2,589,016	-				+0.7
2,589,016	-				-0.1
2,589,101	+				-0.8
2,589,128	+				-0.2
2,589,128	+				-1.0
2,589,129	-				-0.3
2,589,129	-				-0.1
2,589,159	-				+0.7
2,589,159	-				-0.4
2,589,272	+				-0.4
2,589,288	-				-0.6
2,589,288	-				+0.0
2,589,300	+				+0.3
2,589,300	+				-0.1
2,589,300	+				+0.9
2,589,300	+				-0.3
2,589,300	+				+0.9
2,589,301	-				-1.4
2,589,301	-				-0.6
2,589,325	+				+0.1
2,589,326	-				-0.3
2,589,372	+				-0.4
2,589,372	+				+0.1
2,589,373	-				-0.0
2,589,373	-				+0.8
2,589,432	+				-0.3
2,589,432	+				-0.6
2,589,471	+		GFF5578	0.13	+0.2
2,589,471	+		GFF5578	0.13	-0.5
2,589,471	+		GFF5578	0.13	-0.4
2,589,471	+		GFF5578	0.13	-0.6
2,589,471	+		GFF5578	0.13	+0.0
2,589,471	+		GFF5578	0.13	+0.1
2,589,472	-		GFF5578	0.13	-1.3
2,589,654	+		GFF5578	0.28	-0.1
2,589,654	+		GFF5578	0.28	-0.2
2,589,654	+		GFF5578	0.28	-0.0
2,589,655	-		GFF5578	0.28	-0.2
2,589,655	-		GFF5578	0.28	-0.3
2,589,655	-		GFF5578	0.28	-0.5
2,589,655	-		GFF5578	0.28	+0.2
2,589,738	+		GFF5578	0.35	-0.8
2,589,738	+		GFF5578	0.35	+0.5
2,589,738	+		GFF5578	0.35	+0.1
2,589,738	+		GFF5578	0.35	-0.2
2,589,739	-		GFF5578	0.35	-1.1
2,589,879	+		GFF5578	0.47	-0.5
2,589,879	+		GFF5578	0.47	-0.4
2,589,879	+		GFF5578	0.47	+0.9
2,589,879	+		GFF5578	0.47	-0.4
2,589,879	+		GFF5578	0.47	+0.4
2,589,879	+		GFF5578	0.47	+0.5
2,589,880	-		GFF5578	0.47	+0.4
2,589,880	-		GFF5578	0.47	+0.3
2,589,880	-		GFF5578	0.47	-0.3
2,589,880	-		GFF5578	0.47	+1.2
2,589,880	-		GFF5578	0.47	-0.4
2,589,880	-		GFF5578	0.47	+0.1
2,589,906	+		GFF5578	0.49	-0.3
2,589,906	+		GFF5578	0.49	+0.2
2,589,907	-		GFF5578	0.49	+0.3
2,589,918	+		GFF5578	0.50	+0.2
2,589,918	+		GFF5578	0.50	+1.0
2,589,918	+		GFF5578	0.50	+0.2
2,589,919	-		GFF5578	0.50	-0.6
2,589,919	-		GFF5578	0.50	-0.1
2,589,919	-		GFF5578	0.50	-0.7
2,589,996	+		GFF5578	0.56	-1.0
2,589,997	-		GFF5578	0.57	-0.6
2,590,053	+		GFF5578	0.61	-0.6
2,590,054	-		GFF5578	0.61	-3.2
2,590,083	+		GFF5578	0.64	-0.3
2,590,084	-		GFF5578	0.64	+0.0
2,590,084	-		GFF5578	0.64	-0.7
2,590,128	+		GFF5578	0.67	+0.4
2,590,128	+		GFF5578	0.67	+1.1
2,590,129	-		GFF5578	0.67	+1.1
2,590,129	-		GFF5578	0.67	+0.1
2,590,129	-		GFF5578	0.67	-0.5
2,590,129	-		GFF5578	0.67	+0.2
2,590,129	-		GFF5578	0.67	+0.4
2,590,129	-		GFF5578	0.67	+0.1
2,590,129	-		GFF5578	0.67	+0.1
2,590,129	-		GFF5578	0.67	+0.5
2,590,129	-		GFF5578	0.67	-0.2
2,590,129	-		GFF5578	0.67	-0.0
2,590,129	-		GFF5578	0.67	-0.2
2,590,155	+		GFF5578	0.70	+0.7
2,590,227	+		GFF5578	0.76	-0.2
2,590,227	+		GFF5578	0.76	+0.6
2,590,227	+		GFF5578	0.76	+0.2
2,590,227	+		GFF5578	0.76	-0.7
2,590,228	-		GFF5578	0.76	-0.8
2,590,288	-		GFF5578	0.81	-0.2
2,590,383	+		GFF5578	0.89	-0.3
2,590,428	+				+0.4
2,590,428	+				-1.0
2,590,428	+				+0.7
2,590,428	+				-0.6
2,590,428	+				-0.7
2,590,429	-				+0.0
2,590,781	+		GFF5579	0.11	+0.3
2,590,781	+		GFF5579	0.11	+0.2
2,590,782	-		GFF5579	0.12	-0.2
2,590,958	+		GFF5579	0.31	+0.3
2,590,958	+		GFF5579	0.31	-0.9
2,590,958	+		GFF5579	0.31	+0.2
2,590,959	-		GFF5579	0.31	-0.2
2,590,959	-		GFF5579	0.31	-0.0
2,590,959	-		GFF5579	0.31	-0.4
2,591,228	+		GFF5579	0.62	+0.0
2,591,229	-		GFF5579	0.62	-0.8
2,591,408	+		GFF5579	0.82	+0.7
2,591,408	+		GFF5579	0.82	+0.1
2,591,409	-		GFF5579	0.82	+0.0
2,591,435	+		GFF5579	0.85	+1.3
2,591,435	+		GFF5579	0.85	+0.5
2,591,435	+		GFF5579	0.85	-0.9
2,591,435	+		GFF5579	0.85	-0.2
2,591,436	-		GFF5579	0.85	-0.2
2,591,436	-		GFF5579	0.85	-2.0
2,591,436	-		GFF5579	0.85	+0.4
2,591,436	-		GFF5579	0.85	-0.9