Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5069

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,084,171	-		GFF5068	0.29	-0.5
2,084,384	-		GFF5068	0.54	-0.3
2,084,476	+		GFF5068	0.64	-0.6
2,084,656	+		GFF5068	0.85	+0.1
2,084,656	+		GFF5068	0.85	-0.3
2,084,656	+		GFF5068	0.85	+0.5
2,084,657	-		GFF5068	0.85	-0.4
2,084,943	+				-0.3
2,084,945	-				-0.2
2,084,961	+				-0.4
2,084,961	+				-0.9
2,084,962	-				-0.5
2,085,040	-				-0.6
2,085,054	+				-0.1
2,085,090	+		GFF5069	0.21	-0.2
2,085,091	-		GFF5069	0.22	+0.1
2,085,165	+		GFF5069	0.47	+0.5
2,085,165	+		GFF5069	0.47	+0.2
2,085,166	-		GFF5069	0.47	+0.8
2,085,166	-		GFF5069	0.47	+0.6
2,085,318	+				-0.0
2,085,781	+		GFF5070	0.38	-0.1
2,085,781	+		GFF5070	0.38	+0.1
2,085,782	-		GFF5070	0.39	+1.2
2,085,782	-		GFF5070	0.39	-0.7
2,085,782	-		GFF5070	0.39	-0.1
2,085,782	-		GFF5070	0.39	-0.7
2,085,946	+		GFF5070	0.58	-0.0
2,086,145	-		GFF5070	0.81	+0.4
2,086,169	-		GFF5070	0.84	+0.3
2,086,169	-		GFF5070	0.84	+0.3