Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4806

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,818,408	+		GFF4805	0.33	+0.5
1,818,408	+		GFF4805	0.33	+0.3
1,818,409	-		GFF4805	0.34	-0.2
1,818,499	-		GFF4805	0.40	-1.0
1,819,107	+		GFF4805	0.81	+0.7
1,819,107	+		GFF4805	0.81	-0.2
1,819,108	-		GFF4805	0.81	-0.3
1,819,108	-		GFF4805	0.81	+0.3
1,819,108	-		GFF4805	0.81	-0.3
1,819,113	+		GFF4805	0.81	+0.3
1,819,113	+		GFF4805	0.81	+0.0
1,819,113	+		GFF4805	0.81	-0.1
1,819,113	+		GFF4805	0.81	-0.3
1,819,113	+		GFF4805	0.81	+0.4
1,819,113	+		GFF4805	0.81	-0.7
1,819,113	+		GFF4805	0.81	-0.5
1,819,113	+		GFF4805	0.81	-1.0
1,819,113	+		GFF4805	0.81	+0.6
1,819,114	-		GFF4805	0.81	+0.3
1,819,114	-		GFF4805	0.81	-0.3
1,819,114	-		GFF4805	0.81	+0.2
1,819,114	-		GFF4805	0.81	+0.6
1,819,114	-		GFF4805	0.81	+0.1
1,819,114	-		GFF4805	0.81	-0.2
1,819,114	-		GFF4805	0.81	+0.2
1,819,296	+				-0.2
1,819,297	-				+0.4
1,819,374	+				+0.7
1,819,374	+				-0.3
1,819,789	+				+0.6
1,819,789	+				+0.1
1,819,789	+				+0.4
1,819,790	-				-0.1
1,819,790	-				-0.3
1,819,790	-				+0.4
1,819,790	-				+0.1
1,819,864	+		GFF4807	0.15	+0.5
1,819,864	+		GFF4807	0.15	+0.6
1,819,864	+		GFF4807	0.15	+0.7
1,819,865	-		GFF4807	0.15	+0.0
1,819,882	+		GFF4807	0.18	+2.0
1,819,882	+		GFF4807	0.18	-0.2
1,819,882	+		GFF4807	0.18	-1.1
1,819,882	+		GFF4807	0.18	-0.9
1,819,882	+		GFF4807	0.18	+0.2
1,819,883	-		GFF4807	0.18	+0.2
1,819,883	-		GFF4807	0.18	-0.4
1,820,098	+		GFF4807	0.48	+0.0
1,820,098	+		GFF4807	0.48	-0.5
1,820,098	+		GFF4807	0.48	+0.1
1,820,098	+		GFF4807	0.48	+0.7
1,820,098	+		GFF4807	0.48	+0.8
1,820,098	+		GFF4807	0.48	+0.6
1,820,098	+		GFF4807	0.48	-0.0
1,820,098	+		GFF4807	0.48	+1.4
1,820,098	+		GFF4807	0.48	-0.5
1,820,098	+		GFF4807	0.48	-0.0
1,820,099	-		GFF4807	0.48	-0.4
1,820,099	-		GFF4807	0.48	-0.8
1,820,099	-		GFF4807	0.48	-1.2
1,820,099	-		GFF4807	0.48	+0.0
1,820,099	-		GFF4807	0.48	-0.1
1,820,099	-		GFF4807	0.48	-0.0
1,820,188	+		GFF4807	0.60	+0.3
1,820,188	+		GFF4807	0.60	+0.6
1,820,188	+		GFF4807	0.60	-0.2
1,820,188	+		GFF4807	0.60	+0.0
1,820,380	+		GFF4807	0.86	+0.1
1,820,380	+		GFF4807	0.86	-2.5
1,820,380	+		GFF4807	0.86	+0.4
1,820,381	-		GFF4807	0.87	-0.0
1,820,511	-				-1.8
1,820,543	+				+0.2
1,820,543	+				+0.8
1,820,543	+				+0.3
1,820,543	+				+0.2
1,820,543	+				+0.7
1,820,543	+				+0.1
1,820,543	+				+0.0
1,820,543	+				-0.4
1,820,543	+				+0.1
1,820,543	+				-0.1
1,820,543	+				+0.1
1,820,544	-				-0.1
1,820,544	-				+0.0
1,820,544	-				+0.5
1,820,544	-				+1.0
1,820,544	-				-1.5
1,820,544	-				-0.2
1,820,544	-				+0.0
1,820,544	-				-0.2
1,820,714	+		GFF4808	0.12	+0.3
1,820,714	+		GFF4808	0.12	-0.0
1,820,715	-		GFF4808	0.12	+0.6
1,820,715	-		GFF4808	0.12	-0.9
1,820,715	-		GFF4808	0.12	+0.3
1,820,715	-		GFF4808	0.12	+0.4
1,820,715	-		GFF4808	0.12	+0.2
1,820,715	-		GFF4808	0.12	-0.6
1,820,715	-		GFF4808	0.12	+0.7