Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4548

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,478,150	+				-0.7
1,478,150	+				+0.2
1,478,366	+				+0.4
1,478,550	+				+0.6
1,478,550	+				-0.7
1,478,550	+				+0.6
1,478,550	+				-0.3
1,478,551	-				-1.0
1,478,551	-				-0.6
1,478,616	+		GFF4547	0.35	-0.3
1,478,616	+		GFF4547	0.35	+1.0
1,478,617	-		GFF4547	0.36	+0.4
1,478,641	-		GFF4547	0.45	-0.0
1,478,837	+				-0.9
1,479,260	+		GFF4548	0.19	+1.1
1,479,261	-		GFF4548	0.19	+0.0
1,479,269	+		GFF4548	0.19	+0.9
1,479,386	-		GFF4548	0.25	-0.6
1,479,710	+		GFF4548	0.42	+0.9
1,480,175	+		GFF4548	0.65	+0.1
1,480,175	+		GFF4548	0.65	-0.7
1,480,175	+		GFF4548	0.65	-0.1
1,480,176	-		GFF4548	0.65	+1.6
1,480,176	-		GFF4548	0.65	-0.1
1,480,176	-		GFF4548	0.65	-0.2
1,480,176	-		GFF4548	0.65	+0.1
1,480,176	-		GFF4548	0.65	-0.3
1,480,176	-		GFF4548	0.65	+0.3
1,480,188	-		GFF4548	0.66	-0.2
1,480,284	-		GFF4548	0.71	+0.6
1,480,284	-		GFF4548	0.71	+0.6
1,480,465	+		GFF4548	0.80	+0.1
1,480,526	+		GFF4548	0.83	-0.9
1,480,526	+		GFF4548	0.83	+0.2
1,480,526	+		GFF4548	0.83	-0.1
1,480,527	-		GFF4548	0.83	+0.6
1,480,527	-		GFF4548	0.83	-0.5
1,480,527	-		GFF4548	0.83	+0.0
1,480,527	-		GFF4548	0.83	-1.2
1,480,527	-		GFF4548	0.83	+0.1
1,480,527	-		GFF4548	0.83	+0.8
1,480,527	-		GFF4548	0.83	+0.5
1,480,527	-		GFF4548	0.83	-0.1
1,480,527	-		GFF4548	0.83	+0.2
1,480,527	-		GFF4548	0.83	-1.6
1,480,527	-		GFF4548	0.83	+0.6
1,480,527	-		GFF4548	0.83	-0.8
1,481,176	+		GFF4549	0.35	-0.6
1,481,176	+		GFF4549	0.35	+0.6
1,481,176	+		GFF4549	0.35	-0.6
1,481,176	+		GFF4549	0.35	+0.0
1,481,177	-		GFF4549	0.35	-0.1
1,481,177	-		GFF4549	0.35	-0.8
1,481,177	-		GFF4549	0.35	-0.2
1,481,177	-		GFF4549	0.35	-1.8
1,481,177	-		GFF4549	0.35	-0.0
1,481,177	-		GFF4549	0.35	-0.1
1,481,177	-		GFF4549	0.35	-0.7
1,481,491	+		GFF4549	0.69	+0.2
1,481,492	-		GFF4549	0.69	-0.1
1,481,492	-		GFF4549	0.69	-1.0
1,481,492	-		GFF4549	0.69	+0.8
1,481,492	-		GFF4549	0.69	-0.1
1,481,530	+		GFF4549	0.74	-1.1
1,481,531	-		GFF4549	0.74	+0.1