Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4517

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,440,950	+		GFF4515	0.56	+0.6
1,440,951	-		GFF4515	0.56	-0.2
1,440,951	-		GFF4515	0.56	-1.3
1,440,951	-		GFF4515	0.56	+1.9
1,440,981	-		GFF4515	0.59	+1.2
1,441,166	+		GFF4515	0.73	+1.2
1,441,166	+		GFF4515	0.73	-0.1
1,441,166	+		GFF4515	0.73	-0.1
1,441,166	+		GFF4515	0.73	-0.5
1,441,167	-		GFF4515	0.73	-0.4
1,441,167	-		GFF4515	0.73	-0.2
1,441,167	-		GFF4515	0.73	-0.5
1,441,293	-		GFF4515	0.83	+0.5
1,441,293	-		GFF4515	0.83	+0.2
1,441,293	-		GFF4515	0.83	-0.2
1,441,549	+				-0.1
1,441,549	+				+0.2
1,441,549	+				+0.3
1,441,550	-				-0.2
1,441,550	-				-0.0
1,441,786	+		GFF4516	0.60	-0.9
1,441,786	+		GFF4516	0.60	-0.0
1,441,786	+		GFF4516	0.60	-0.0
1,441,786	+		GFF4516	0.60	+0.4
1,441,786	+		GFF4516	0.60	-2.4
1,441,787	-		GFF4516	0.60	-0.7
1,442,279	+		GFF4517	0.16	-1.0
1,442,279	+		GFF4517	0.16	+0.1
1,442,279	+		GFF4517	0.16	+1.3
1,442,280	-		GFF4517	0.16	+0.2
1,442,336	+		GFF4517	0.19	+0.1
1,442,336	+		GFF4517	0.19	-0.3
1,442,336	+		GFF4517	0.19	-1.1
1,442,336	+		GFF4517	0.19	+1.3
1,442,336	+		GFF4517	0.19	-0.2
1,442,336	+		GFF4517	0.19	-0.1
1,442,336	+		GFF4517	0.19	-0.1
1,442,336	+		GFF4517	0.19	-0.0
1,442,337	-		GFF4517	0.19	-0.0
1,442,337	-		GFF4517	0.19	-0.3
1,442,337	-		GFF4517	0.19	-0.2
1,442,337	-		GFF4517	0.19	+1.2
1,442,337	-		GFF4517	0.19	+0.3
1,442,340	-		GFF4517	0.19	+0.3
1,442,573	+		GFF4517	0.29	-1.5
1,442,573	+		GFF4517	0.29	-0.1
1,442,574	-		GFF4517	0.29	+0.3
1,442,574	-		GFF4517	0.29	+0.3
1,442,574	-		GFF4517	0.29	-1.8
1,442,756	+		GFF4517	0.37	+0.5
1,442,756	+		GFF4517	0.37	+0.2
1,442,756	+		GFF4517	0.37	-0.0
1,442,757	-		GFF4517	0.37	+0.5
1,442,757	-		GFF4517	0.37	+0.0
1,442,789	+		GFF4517	0.39	+0.5
1,442,790	-		GFF4517	0.39	-0.2
1,442,807	+		GFF4517	0.39	+0.6
1,442,807	+		GFF4517	0.39	-0.2
1,442,807	+		GFF4517	0.39	-0.2
1,442,807	+		GFF4517	0.39	+1.5
1,442,808	-		GFF4517	0.39	+0.2
1,442,808	-		GFF4517	0.39	+0.9
1,442,808	-		GFF4517	0.39	-0.4
1,442,933	+		GFF4517	0.45	-1.1
1,442,933	+		GFF4517	0.45	-0.3
1,442,934	-		GFF4517	0.45	-0.2
1,442,934	-		GFF4517	0.45	-0.5
1,442,934	-		GFF4517	0.45	-0.2
1,442,934	-		GFF4517	0.45	-0.2
1,442,969	+		GFF4517	0.46	-0.2
1,442,969	+		GFF4517	0.46	-0.4
1,442,969	+		GFF4517	0.46	+0.3
1,442,969	+		GFF4517	0.46	+0.2
1,442,970	-		GFF4517	0.47	+0.3
1,442,970	-		GFF4517	0.47	-0.0
1,442,970	-		GFF4517	0.47	-0.9
1,442,970	-		GFF4517	0.47	+0.8
1,442,970	-		GFF4517	0.47	+0.3
1,442,970	-		GFF4517	0.47	+0.6
1,442,970	-		GFF4517	0.47	-0.0
1,442,975	+		GFF4517	0.47	-0.2
1,442,976	-		GFF4517	0.47	+0.0
1,442,976	-		GFF4517	0.47	+0.1
1,443,035	+		GFF4517	0.49	+0.0
1,443,035	+		GFF4517	0.49	-0.2
1,443,035	+		GFF4517	0.49	-0.2
1,443,036	-		GFF4517	0.49	-0.1
1,443,036	-		GFF4517	0.49	+0.3
1,443,036	-		GFF4517	0.49	-0.8
1,443,036	-		GFF4517	0.49	-0.2
1,443,221	+		GFF4517	0.58	-1.2
1,443,275	+		GFF4517	0.60	-0.1
1,443,276	-		GFF4517	0.60	+0.1
1,443,339	-		GFF4517	0.63	+0.1
1,443,339	-		GFF4517	0.63	-0.1
1,443,339	-		GFF4517	0.63	+1.6
1,443,560	+		GFF4517	0.72	-0.0
1,443,560	+		GFF4517	0.72	+0.5
1,443,560	+		GFF4517	0.72	-0.6
1,443,560	+		GFF4517	0.72	-0.2
1,443,560	+		GFF4517	0.72	-0.0
1,443,561	-		GFF4517	0.72	-0.2
1,443,561	-		GFF4517	0.72	-0.2
1,443,561	-		GFF4517	0.72	-0.4
1,443,561	-		GFF4517	0.72	-0.1
1,443,725	+		GFF4517	0.80	+0.4
1,443,725	+		GFF4517	0.80	+1.6
1,443,726	-		GFF4517	0.80	+0.5
1,443,726	-		GFF4517	0.80	-0.0
1,443,726	-		GFF4517	0.80	-0.4
1,443,728	+		GFF4517	0.80	+0.6
1,443,728	+		GFF4517	0.80	+0.7
1,443,810	-		GFF4517	0.83	+0.8
1,443,866	+		GFF4517	0.86	+0.2
1,443,956	+		GFF4517	0.90	-0.2
1,444,115	+				+1.2
1,444,116	-				+0.2
1,444,178	+				+0.2
1,444,179	-				-0.7
1,444,179	-				-1.0