Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4283

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,209,458	+		GFF4282	0.60	+0.3
1,209,458	+		GFF4282	0.60	-0.0
1,209,459	-		GFF4282	0.60	+1.1
1,209,533	+		GFF4282	0.67	+0.2
1,209,533	+		GFF4282	0.67	-0.2
1,209,533	+		GFF4282	0.67	+0.2
1,209,533	+		GFF4282	0.67	+1.0
1,209,533	+		GFF4282	0.67	-0.0
1,209,534	-		GFF4282	0.67	+0.4
1,209,608	+		GFF4282	0.73	+0.5
1,209,609	-		GFF4282	0.73	-0.4
1,209,609	-		GFF4282	0.73	-1.1
1,209,650	+		GFF4282	0.77	-0.8
1,209,650	+		GFF4282	0.77	-0.4
1,209,650	+		GFF4282	0.77	-0.2
1,209,650	+		GFF4282	0.77	+0.0
1,209,650	+		GFF4282	0.77	-2.3
1,209,650	+		GFF4282	0.77	-0.4
1,209,650	+		GFF4282	0.77	-0.1
1,209,650	+		GFF4282	0.77	+0.4
1,209,651	-		GFF4282	0.77	-0.0
1,209,651	-		GFF4282	0.77	-0.9
1,209,683	+		GFF4282	0.79	-0.9
1,209,683	+		GFF4282	0.79	-0.6
1,209,683	+		GFF4282	0.79	-0.3
1,209,683	+		GFF4282	0.79	+0.1
1,209,684	-		GFF4282	0.80	+0.4
1,209,684	-		GFF4282	0.80	-0.3
1,209,746	+		GFF4282	0.85	-0.5
1,209,746	+		GFF4282	0.85	+0.1
1,209,746	+		GFF4282	0.85	-0.0
1,209,746	+		GFF4282	0.85	-1.4
1,209,746	+		GFF4282	0.85	-1.4
1,209,746	+		GFF4282	0.85	+0.2
1,209,747	-		GFF4282	0.85	-0.3
1,209,747	-		GFF4282	0.85	-0.3
1,209,747	-		GFF4282	0.85	+0.1
1,209,747	-		GFF4282	0.85	-0.3
1,209,747	-		GFF4282	0.85	-0.1
1,209,747	-		GFF4282	0.85	-0.3
1,209,747	-		GFF4282	0.85	-0.9
1,209,747	-		GFF4282	0.85	+0.6
1,210,142	+		GFF4283	0.21	-0.3
1,210,142	+		GFF4283	0.21	-0.2
1,210,142	+		GFF4283	0.21	-0.1
1,210,142	+		GFF4283	0.21	-0.3
1,210,143	-		GFF4283	0.21	-0.3
1,210,143	-		GFF4283	0.21	-0.1
1,210,143	-		GFF4283	0.21	-0.5
1,210,295	+		GFF4283	0.41	-0.2
1,210,295	+		GFF4283	0.41	+0.7
1,210,295	+		GFF4283	0.41	-0.0
1,210,295	+		GFF4283	0.41	+0.6
1,210,296	-		GFF4283	0.41	+0.0
1,210,296	-		GFF4283	0.41	-0.3
1,210,296	-		GFF4283	0.41	-0.6
1,210,296	-		GFF4283	0.41	-0.0
1,210,412	+		GFF4283	0.57	-1.0
1,210,427	+		GFF4283	0.59	+0.3
1,210,427	+		GFF4283	0.59	+0.2
1,210,427	+		GFF4283	0.59	-0.0
1,210,427	+		GFF4283	0.59	+0.4
1,210,427	+		GFF4283	0.59	+1.2
1,210,428	-		GFF4283	0.59	-0.5
1,210,428	-		GFF4283	0.59	-1.2
1,210,428	-		GFF4283	0.59	-0.5
1,210,428	-		GFF4283	0.59	+0.2
1,210,428	-		GFF4283	0.59	-1.4
1,210,428	-		GFF4283	0.59	-0.4
1,210,428	-		GFF4283	0.59	+1.2
1,210,428	-		GFF4283	0.59	+0.1
1,210,428	-		GFF4283	0.59	-0.8
1,210,428	-		GFF4283	0.59	-0.3
1,210,577	+		GFF4283	0.79	-0.1
1,210,815	+				-0.0
1,210,815	+				-0.3
1,210,952	+				+1.2
1,210,952	+				+0.9
1,210,952	+				+0.1
1,210,953	-				-0.1
1,210,953	-				+1.7
1,210,953	-				+0.1
1,210,953	-				-0.1
1,210,953	-				-0.0
1,210,953	-				+0.6
1,210,953	-				+1.3
1,210,953	-				-0.5
1,210,953	-				-0.1
1,210,982	+		GFF4284	0.12	+0.1
1,210,991	+		GFF4284	0.14	-0.6
1,210,991	+		GFF4284	0.14	-0.1
1,210,992	-		GFF4284	0.14	-1.0
1,210,992	-		GFF4284	0.14	-0.6
1,210,992	-		GFF4284	0.14	+0.3
1,210,992	-		GFF4284	0.14	-0.3
1,210,992	-		GFF4284	0.14	+1.0
1,211,045	+		GFF4284	0.21	+0.3
1,211,045	+		GFF4284	0.21	+0.2
1,211,045	+		GFF4284	0.21	+0.6
1,211,045	+		GFF4284	0.21	-0.4
1,211,045	+		GFF4284	0.21	+0.3
1,211,046	-		GFF4284	0.21	-1.1
1,211,046	-		GFF4284	0.21	+0.1
1,211,046	-		GFF4284	0.21	+0.6
1,211,046	-		GFF4284	0.21	-0.1
1,211,054	+		GFF4284	0.22	+0.2
1,211,055	-		GFF4284	0.22	+0.1
1,211,078	+		GFF4284	0.25	+0.6
1,211,078	+		GFF4284	0.25	+0.1
1,211,078	+		GFF4284	0.25	+0.4
1,211,078	+		GFF4284	0.25	-0.6
1,211,078	+		GFF4284	0.25	-0.4
1,211,078	+		GFF4284	0.25	-0.1
1,211,079	-		GFF4284	0.25	-0.7
1,211,079	-		GFF4284	0.25	+0.1
1,211,079	-		GFF4284	0.25	+0.9
1,211,079	-		GFF4284	0.25	-1.4
1,211,081	+		GFF4284	0.26	-0.3
1,211,087	+		GFF4284	0.27	+0.9
1,211,087	+		GFF4284	0.27	-0.6
1,211,087	+		GFF4284	0.27	+0.4
1,211,087	+		GFF4284	0.27	+0.5
1,211,087	+		GFF4284	0.27	-1.4
1,211,087	+		GFF4284	0.27	-1.1
1,211,087	+		GFF4284	0.27	-0.6
1,211,088	-		GFF4284	0.27	+0.4
1,211,088	-		GFF4284	0.27	-0.7
1,211,088	-		GFF4284	0.27	+0.2
1,211,222	+		GFF4284	0.45	-0.0
1,211,222	+		GFF4284	0.45	+0.3
1,211,223	-		GFF4284	0.45	-0.2
1,211,223	-		GFF4284	0.45	+0.1
1,211,223	-		GFF4284	0.45	+0.1
1,211,276	+		GFF4284	0.52	+0.6
1,211,277	-		GFF4284	0.52	-0.1
1,211,285	+		GFF4284	0.53	-0.1
1,211,285	+		GFF4284	0.53	+0.0
1,211,286	-		GFF4284	0.54	-0.2
1,211,286	-		GFF4284	0.54	+0.4
1,211,286	-		GFF4284	0.54	-0.4
1,211,286	-		GFF4284	0.54	+0.4
1,211,294	+		GFF4284	0.55	+0.4
1,211,294	+		GFF4284	0.55	+0.1
1,211,294	+		GFF4284	0.55	+1.2
1,211,295	-		GFF4284	0.55	+0.3
1,211,436	-		GFF4284	0.74	-0.2
1,211,444	+		GFF4284	0.75	+0.0
1,211,445	-		GFF4284	0.75	+0.0
1,211,445	-		GFF4284	0.75	-0.5
1,211,558	+				+0.3
1,211,558	+				+1.3
1,211,558	+				-0.1
1,211,558	+				+0.2
1,211,558	+				+1.4
1,211,558	+				-0.2
1,211,558	+				+1.0
1,211,559	-				-0.1
1,211,559	-				+0.1
1,211,559	-				-0.3
1,211,559	-				+0.2
1,211,559	-				-0.2
1,211,665	+				-0.5
1,211,666	-				-0.4
1,211,668	-				-0.4
1,211,668	-				+0.4
1,211,668	-				+0.5
1,211,668	-				-0.0
1,211,668	-				+0.0
1,211,668	-				-0.3
1,211,668	-				-1.1
1,211,668	-				-0.1