Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF403 and GFF404 are separated by 22 nucleotides GFF404 and GFF405 are separated by 12 nucleotides GFF405 and GFF406 are separated by 156 nucleotides GFF406 and GFF407 are separated by 76 nucleotides GFF407 and GFF408 overlap by 6 nucleotides
GFF403 - putative tetratricopeptide repeat family protein, at 72,257 to 73,030
GFF403
GFF404 - Transcriptional regulator, TetR family, at 73,053 to 73,712
GFF404
GFF405 - hypothetical protein, at 73,725 to 74,936
GFF405
GFF406 - Polyhydroxyalkanoate granule-associated protein PhaF, at 75,093 to 75,623
GFF406
GFF407 - hypothetical protein, at 75,700 to 75,813
GFF407
GFF408 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 75,808 to 77,793
GFF408
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1 at 72.789 kb on + strand, within GFF403 at 72.790 kb on - strand, within GFF403 at 72.798 kb on + strand, within GFF403 at 72.798 kb on + strand, within GFF403 at 72.799 kb on - strand, within GFF403 at 72.799 kb on - strand, within GFF403 at 73.069 kb on + strand at 73.210 kb on + strand, within GFF404 at 73.211 kb on - strand, within GFF404 at 73.211 kb on - strand, within GFF404 at 73.228 kb on + strand, within GFF404 at 73.228 kb on + strand, within GFF404 at 73.526 kb on - strand, within GFF404 at 73.567 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.576 kb on + strand, within GFF404 at 73.577 kb on - strand, within GFF404 at 73.577 kb on - strand, within GFF404 at 73.954 kb on + strand, within GFF405 at 73.955 kb on - strand, within GFF405 at 74.296 kb on + strand, within GFF405 at 74.297 kb on - strand, within GFF405 at 74.297 kb on - strand, within GFF405 at 74.800 kb on + strand, within GFF405 at 74.800 kb on + strand, within GFF405 at 74.869 kb on + strand at 74.869 kb on + strand at 74.870 kb on - strand at 75.664 kb on - strand at 75.688 kb on - strand at 75.814 kb on + strand at 75.814 kb on + strand at 75.815 kb on - strand at 75.815 kb on - strand at 75.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 72,789 + GFF403 0.69 +0.9 72,790 - GFF403 0.69 -0.2 72,798 + GFF403 0.70 +1.2 72,798 + GFF403 0.70 +0.8 72,799 - GFF403 0.70 +0.7 72,799 - GFF403 0.70 +1.0 73,069 + -0.7 73,210 + GFF404 0.24 -0.0 73,211 - GFF404 0.24 -0.2 73,211 - GFF404 0.24 -1.0 73,228 + GFF404 0.27 -0.5 73,228 + GFF404 0.27 +0.1 73,526 - GFF404 0.72 -0.1 73,567 + GFF404 0.78 -1.3 73,573 + GFF404 0.79 +0.5 73,573 + GFF404 0.79 +0.2 73,573 + GFF404 0.79 +0.1 73,574 - GFF404 0.79 -0.4 73,574 - GFF404 0.79 +0.5 73,574 - GFF404 0.79 -0.3 73,576 + GFF404 0.79 +0.6 73,577 - GFF404 0.79 +0.5 73,577 - GFF404 0.79 -0.3 73,954 + GFF405 0.19 +0.8 73,955 - GFF405 0.19 -0.1 74,296 + GFF405 0.47 +0.5 74,297 - GFF405 0.47 +0.2 74,297 - GFF405 0.47 +0.3 74,800 + GFF405 0.89 +0.3 74,800 + GFF405 0.89 +0.4 74,869 + +0.3 74,869 + +0.3 74,870 - +0.2 75,664 - -0.3 75,688 - -0.8 75,814 + +0.3 75,814 + -0.3 75,815 - -0.3 75,815 - -0.1 75,815 - -0.2
Or see this region's nucleotide sequence