Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4002 and GFF4003 are separated by 113 nucleotides GFF4003 and GFF4004 are separated by 16 nucleotides GFF4004 and GFF4005 are separated by 83 nucleotides GFF4005 and GFF4006 are separated by 38 nucleotides
GFF4002 - Periplasmic binding protein-related protein, at 917,813 to 918,625
GFF4002
GFF4003 - Endonuclease III (EC 4.2.99.18), at 918,739 to 919,377
GFF4003
GFF4004 - LysR family regulatory protein, at 919,394 to 920,338
GFF4004
GFF4005 - hypothetical protein, at 920,422 to 920,727
GFF4005
GFF4006 - Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 920,766 to 922,010
GFF4006
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 918.492 kb on + strand, within GFF4002 at 918.492 kb on + strand, within GFF4002 at 918.658 kb on + strand at 918.659 kb on - strand at 918.659 kb on - strand at 918.659 kb on - strand at 918.659 kb on - strand at 918.824 kb on + strand, within GFF4003 at 918.824 kb on + strand, within GFF4003 at 918.824 kb on + strand, within GFF4003 at 918.825 kb on - strand, within GFF4003 at 918.825 kb on - strand, within GFF4003 at 918.866 kb on + strand, within GFF4003 at 919.134 kb on - strand, within GFF4003 at 919.155 kb on - strand, within GFF4003 at 919.155 kb on - strand, within GFF4003 at 919.155 kb on - strand, within GFF4003 at 919.155 kb on - strand, within GFF4003 at 919.479 kb on + strand at 919.480 kb on - strand at 919.480 kb on - strand at 919.480 kb on - strand at 919.618 kb on - strand, within GFF4004 at 919.618 kb on - strand, within GFF4004 at 920.612 kb on - strand, within GFF4005 at 920.612 kb on - strand, within GFF4005 at 921.024 kb on + strand, within GFF4006 at 921.025 kb on - strand, within GFF4006 at 921.025 kb on - strand, within GFF4006 at 921.219 kb on + strand, within GFF4006 at 921.315 kb on + strand, within GFF4006 at 921.316 kb on - strand, within GFF4006
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 918,492 + GFF4002 0.84 -0.5 918,492 + GFF4002 0.84 +0.9 918,658 + +0.5 918,659 - +0.1 918,659 - -0.6 918,659 - +1.1 918,659 - +0.6 918,824 + GFF4003 0.13 -1.4 918,824 + GFF4003 0.13 -0.4 918,824 + GFF4003 0.13 -0.2 918,825 - GFF4003 0.13 +0.1 918,825 - GFF4003 0.13 -0.4 918,866 + GFF4003 0.20 -2.0 919,134 - GFF4003 0.62 -1.2 919,155 - GFF4003 0.65 -0.6 919,155 - GFF4003 0.65 +0.1 919,155 - GFF4003 0.65 +1.4 919,155 - GFF4003 0.65 -0.6 919,479 + -0.6 919,480 - -0.9 919,480 - +0.1 919,480 - -0.3 919,618 - GFF4004 0.24 +0.6 919,618 - GFF4004 0.24 +2.4 920,612 - GFF4005 0.62 -0.1 920,612 - GFF4005 0.62 +0.0 921,024 + GFF4006 0.21 -0.2 921,025 - GFF4006 0.21 -0.2 921,025 - GFF4006 0.21 -1.4 921,219 + GFF4006 0.36 -0.1 921,315 + GFF4006 0.44 +0.2 921,316 - GFF4006 0.44 -0.7
Or see this region's nucleotide sequence