Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3896 and GFF3897 overlap by 4 nucleotides GFF3897 and GFF3898 are separated by 4 nucleotides GFF3898 and GFF3899 overlap by 8 nucleotides
GFF3896 - ABC transporter in pyoverdin gene cluster, permease component, at 807,023 to 807,925
GFF3896
GFF3897 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 807,922 to 808,848
GFF3897
GFF3898 - Response regulator BaeR, at 808,853 to 809,557
GFF3898
GFF3899 - Sensory histidine kinase BaeS, at 809,550 to 811,076
GFF3899
Position (kb) 808
809
810 Strain fitness (log2 ratio) -1
0
1
2 at 808.579 kb on + strand, within GFF3897 at 808.580 kb on - strand, within GFF3897 at 808.863 kb on + strand at 808.863 kb on + strand at 808.863 kb on + strand at 808.863 kb on + strand at 808.864 kb on - strand at 808.870 kb on - strand at 808.881 kb on + strand at 808.882 kb on - strand at 808.989 kb on + strand, within GFF3898 at 808.990 kb on - strand, within GFF3898 at 809.061 kb on + strand, within GFF3898 at 809.061 kb on + strand, within GFF3898 at 809.235 kb on + strand, within GFF3898 at 809.235 kb on + strand, within GFF3898 at 809.235 kb on + strand, within GFF3898 at 809.235 kb on + strand, within GFF3898 at 809.236 kb on - strand, within GFF3898 at 809.236 kb on - strand, within GFF3898 at 809.482 kb on - strand, within GFF3898 at 810.025 kb on + strand, within GFF3899 at 810.325 kb on + strand, within GFF3899 at 810.326 kb on - strand, within GFF3899 at 810.326 kb on - strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.515 kb on - strand, within GFF3899 at 810.515 kb on - strand, within GFF3899 at 810.523 kb on + strand, within GFF3899 at 810.523 kb on + strand, within GFF3899
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 808,579 + GFF3897 0.71 -0.2 808,580 - GFF3897 0.71 +2.0 808,863 + +0.2 808,863 + +0.1 808,863 + -0.7 808,863 + +0.4 808,864 - +0.5 808,870 - +0.4 808,881 + +0.4 808,882 - -0.2 808,989 + GFF3898 0.19 -0.2 808,990 - GFF3898 0.19 -0.0 809,061 + GFF3898 0.30 -0.0 809,061 + GFF3898 0.30 +0.7 809,235 + GFF3898 0.54 +0.9 809,235 + GFF3898 0.54 -0.6 809,235 + GFF3898 0.54 -1.1 809,235 + GFF3898 0.54 -0.7 809,236 - GFF3898 0.54 -0.8 809,236 - GFF3898 0.54 -0.4 809,482 - GFF3898 0.89 +0.3 810,025 + GFF3899 0.31 +0.1 810,325 + GFF3899 0.51 +0.4 810,326 - GFF3899 0.51 -0.2 810,326 - GFF3899 0.51 -0.1 810,514 + GFF3899 0.63 -1.1 810,514 + GFF3899 0.63 -0.6 810,514 + GFF3899 0.63 -1.0 810,515 - GFF3899 0.63 +0.4 810,515 - GFF3899 0.63 +0.1 810,523 + GFF3899 0.64 +0.4 810,523 + GFF3899 0.64 +0.1
Or see this region's nucleotide sequence