Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3790 and GFF3791 are separated by 81 nucleotides GFF3791 and GFF3792 are separated by 84 nucleotides GFF3792 and GFF3793 are separated by 20 nucleotides
GFF3790 - Transcriptional regulator, GntR family, at 690,366 to 691,139
GFF3790
GFF3791 - TRAP transporter solute receptor, unknown substrate 3, at 691,221 to 692,354
GFF3791
GFF3792 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 692,439 to 692,942
GFF3792
GFF3793 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 692,963 to 694,258
GFF3793
Position (kb) 691
692
693 Strain fitness (log2 ratio) -1
0
1 at 690.351 kb on + strand at 690.351 kb on + strand at 690.352 kb on - strand at 690.360 kb on + strand at 690.598 kb on - strand, within GFF3790 at 690.792 kb on + strand, within GFF3790 at 690.792 kb on + strand, within GFF3790 at 691.165 kb on + strand at 691.178 kb on + strand at 691.179 kb on - strand at 691.611 kb on + strand, within GFF3791 at 691.701 kb on + strand, within GFF3791 at 691.702 kb on - strand, within GFF3791 at 691.702 kb on - strand, within GFF3791 at 691.713 kb on + strand, within GFF3791 at 691.713 kb on + strand, within GFF3791 at 692.028 kb on + strand, within GFF3791 at 692.028 kb on + strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.068 kb on - strand, within GFF3791 at 692.803 kb on - strand, within GFF3792 at 692.803 kb on - strand, within GFF3792 at 692.803 kb on - strand, within GFF3792 at 692.853 kb on + strand, within GFF3792 at 692.854 kb on - strand, within GFF3792 at 692.854 kb on - strand, within GFF3792 at 692.901 kb on + strand at 692.901 kb on + strand at 692.902 kb on - strand at 692.902 kb on - strand at 693.044 kb on + strand at 693.045 kb on - strand at 693.045 kb on - strand at 693.050 kb on + strand at 693.050 kb on + strand at 693.050 kb on + strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.051 kb on - strand at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.116 kb on + strand, within GFF3793 at 693.117 kb on - strand, within GFF3793 at 693.347 kb on + strand, within GFF3793 at 693.348 kb on - strand, within GFF3793 at 693.348 kb on - strand, within GFF3793
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 690,351 + +0.0 690,351 + -0.9 690,352 - -0.2 690,360 + +0.5 690,598 - GFF3790 0.30 -0.8 690,792 + GFF3790 0.55 -0.0 690,792 + GFF3790 0.55 +1.3 691,165 + -0.0 691,178 + +0.5 691,179 - +0.4 691,611 + GFF3791 0.34 -0.7 691,701 + GFF3791 0.42 -1.4 691,702 - GFF3791 0.42 +0.3 691,702 - GFF3791 0.42 +0.3 691,713 + GFF3791 0.43 -0.1 691,713 + GFF3791 0.43 +0.2 692,028 + GFF3791 0.71 -0.9 692,028 + GFF3791 0.71 +0.6 692,029 - GFF3791 0.71 -0.4 692,029 - GFF3791 0.71 +0.4 692,067 + GFF3791 0.75 -0.9 692,067 + GFF3791 0.75 +0.2 692,068 - GFF3791 0.75 -0.5 692,803 - GFF3792 0.72 -0.4 692,803 - GFF3792 0.72 +0.4 692,803 - GFF3792 0.72 +0.0 692,853 + GFF3792 0.82 +0.1 692,854 - GFF3792 0.82 -0.8 692,854 - GFF3792 0.82 -1.4 692,901 + +0.5 692,901 + +0.1 692,902 - +0.4 692,902 - +0.0 693,044 + -0.2 693,045 - -0.5 693,045 - -0.2 693,050 + +0.1 693,050 + +0.2 693,050 + +0.2 693,051 - +0.2 693,051 - +0.2 693,051 - +0.1 693,051 - +0.3 693,051 - -0.1 693,051 - -0.1 693,051 - +0.7 693,116 + GFF3793 0.12 +1.0 693,116 + GFF3793 0.12 +0.3 693,116 + GFF3793 0.12 -0.3 693,116 + GFF3793 0.12 +1.6 693,116 + GFF3793 0.12 +0.3 693,117 - GFF3793 0.12 +0.2 693,347 + GFF3793 0.30 +0.1 693,348 - GFF3793 0.30 +0.2 693,348 - GFF3793 0.30 -1.2
Or see this region's nucleotide sequence