Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3764 and GFF3765 are separated by 148 nucleotides GFF3765 and GFF3766 are separated by 126 nucleotides GFF3766 and GFF3767 are separated by 38 nucleotides
GFF3764 - inversin protein alternative isoform, putative, at 657,841 to 662,424
GFF3764
GFF3765 - Metal transporter, ZIP family, at 662,573 to 663,565
GFF3765
GFF3766 - hypothetical protein, at 663,692 to 664,084
GFF3766
GFF3767 - hypothetical protein, at 664,123 to 664,629
GFF3767
Position (kb) 662
663
664 Strain fitness (log2 ratio) -1
0
1
2 at 662.009 kb on + strand at 662.009 kb on + strand at 662.009 kb on + strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.072 kb on + strand at 662.073 kb on - strand at 662.073 kb on - strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.511 kb on - strand at 662.511 kb on - strand at 662.511 kb on - strand at 662.527 kb on + strand at 662.528 kb on - strand at 662.730 kb on + strand, within GFF3765 at 662.731 kb on - strand, within GFF3765 at 662.949 kb on + strand, within GFF3765 at 663.293 kb on + strand, within GFF3765 at 663.651 kb on + strand at 663.651 kb on + strand at 663.651 kb on + strand at 663.652 kb on - strand at 663.652 kb on - strand at 663.652 kb on - strand at 663.652 kb on - strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.899 kb on + strand, within GFF3766 at 663.899 kb on + strand, within GFF3766 at 663.899 kb on + strand, within GFF3766 at 663.900 kb on - strand, within GFF3766 at 663.900 kb on - strand, within GFF3766 at 663.983 kb on + strand, within GFF3766 at 663.984 kb on - strand, within GFF3766 at 664.195 kb on + strand, within GFF3767 at 664.195 kb on + strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.208 kb on - strand, within GFF3767 at 664.469 kb on - strand, within GFF3767
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 662,009 + -0.3 662,009 + +0.4 662,009 + +1.1 662,010 - +0.3 662,010 - +0.3 662,010 - +0.1 662,010 - +0.2 662,010 - +0.5 662,010 - +0.2 662,072 + -0.4 662,073 - +0.3 662,073 - +0.3 662,510 + +0.5 662,510 + -0.2 662,510 + -0.7 662,510 + +0.1 662,510 + +1.0 662,511 - -0.1 662,511 - +0.1 662,511 - -0.1 662,527 + -0.5 662,528 - +0.4 662,730 + GFF3765 0.16 +1.1 662,731 - GFF3765 0.16 +0.2 662,949 + GFF3765 0.38 +0.4 663,293 + GFF3765 0.73 +0.1 663,651 + -0.8 663,651 + -0.1 663,651 + +1.4 663,652 - -0.1 663,652 - -0.6 663,652 - -0.1 663,652 - +0.6 663,664 + +2.7 663,664 + +0.1 663,665 - +0.2 663,665 - -0.4 663,665 - -0.2 663,665 - -0.6 663,899 + GFF3766 0.53 +0.3 663,899 + GFF3766 0.53 -0.5 663,899 + GFF3766 0.53 +0.6 663,900 - GFF3766 0.53 +0.4 663,900 - GFF3766 0.53 -0.4 663,983 + GFF3766 0.74 -0.2 663,984 - GFF3766 0.74 -0.1 664,195 + GFF3767 0.14 -0.5 664,195 + GFF3767 0.14 +0.2 664,196 - GFF3767 0.14 +0.1 664,196 - GFF3767 0.14 +0.2 664,196 - GFF3767 0.14 -0.2 664,196 - GFF3767 0.14 -0.4 664,208 - GFF3767 0.17 +0.2 664,469 - GFF3767 0.68 +0.3
Or see this region's nucleotide sequence