Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3674 and GFF3675 are separated by 37 nucleotides GFF3675 and GFF3676 are separated by 118 nucleotides GFF3676 and GFF3677 are separated by 234 nucleotides
GFF3674 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 563,750 to 565,054
GFF3674
GFF3675 - Aspartate aminotransferase (EC 2.6.1.1), at 565,092 to 566,282
GFF3675
GFF3676 - SSU ribosomal protein S15p (S13e), at 566,401 to 566,667
GFF3676
GFF3677 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 566,902 to 569,031
GFF3677
Position (kb) 565
566
567 Strain fitness (log2 ratio) -1
0
1 at 564.188 kb on + strand, within GFF3674 at 564.188 kb on + strand, within GFF3674 at 564.188 kb on + strand, within GFF3674 at 564.189 kb on - strand, within GFF3674 at 564.189 kb on - strand, within GFF3674 at 564.320 kb on + strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.321 kb on - strand, within GFF3674 at 564.338 kb on + strand, within GFF3674 at 564.339 kb on - strand, within GFF3674 at 564.339 kb on - strand, within GFF3674 at 564.458 kb on + strand, within GFF3674 at 564.572 kb on + strand, within GFF3674 at 564.572 kb on + strand, within GFF3674 at 564.573 kb on - strand, within GFF3674 at 564.573 kb on - strand, within GFF3674 at 564.573 kb on - strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.692 kb on + strand, within GFF3674 at 564.693 kb on - strand, within GFF3674 at 564.693 kb on - strand, within GFF3674 at 564.693 kb on - strand, within GFF3674 at 564.735 kb on - strand, within GFF3674 at 564.735 kb on - strand, within GFF3674 at 565.036 kb on + strand at 565.036 kb on + strand at 565.036 kb on + strand at 565.037 kb on - strand at 565.037 kb on - strand at 565.037 kb on - strand at 565.037 kb on - strand at 565.037 kb on - strand at 565.249 kb on - strand, within GFF3675 at 565.249 kb on - strand, within GFF3675 at 565.297 kb on - strand, within GFF3675 at 565.702 kb on - strand, within GFF3675 at 565.702 kb on - strand, within GFF3675 at 565.712 kb on - strand, within GFF3675 at 565.713 kb on + strand, within GFF3675 at 565.713 kb on + strand, within GFF3675 at 565.713 kb on + strand, within GFF3675 at 565.713 kb on + strand, within GFF3675 at 565.713 kb on + strand, within GFF3675 at 565.714 kb on - strand, within GFF3675 at 565.890 kb on + strand, within GFF3675 at 565.890 kb on + strand, within GFF3675 at 565.891 kb on - strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.064 kb on + strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.065 kb on - strand, within GFF3675 at 566.665 kb on + strand at 566.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 564,188 + GFF3674 0.34 +0.1 564,188 + GFF3674 0.34 -0.8 564,188 + GFF3674 0.34 -0.4 564,189 - GFF3674 0.34 +0.9 564,189 - GFF3674 0.34 -0.5 564,320 + GFF3674 0.44 -1.3 564,321 - GFF3674 0.44 -0.8 564,321 - GFF3674 0.44 +0.1 564,321 - GFF3674 0.44 -0.3 564,321 - GFF3674 0.44 -0.5 564,321 - GFF3674 0.44 -0.2 564,338 + GFF3674 0.45 +0.4 564,339 - GFF3674 0.45 +0.2 564,339 - GFF3674 0.45 -0.6 564,458 + GFF3674 0.54 -0.2 564,572 + GFF3674 0.63 +0.5 564,572 + GFF3674 0.63 +0.0 564,573 - GFF3674 0.63 -0.3 564,573 - GFF3674 0.63 -0.3 564,573 - GFF3674 0.63 +0.1 564,692 + GFF3674 0.72 +0.6 564,692 + GFF3674 0.72 +0.3 564,692 + GFF3674 0.72 +0.2 564,692 + GFF3674 0.72 +1.2 564,692 + GFF3674 0.72 -0.2 564,692 + GFF3674 0.72 -0.0 564,693 - GFF3674 0.72 +0.2 564,693 - GFF3674 0.72 +0.6 564,693 - GFF3674 0.72 -0.1 564,735 - GFF3674 0.75 +0.2 564,735 - GFF3674 0.75 +0.9 565,036 + -0.5 565,036 + -0.2 565,036 + +0.1 565,037 - -0.4 565,037 - +0.4 565,037 - +0.5 565,037 - -0.1 565,037 - +1.4 565,249 - GFF3675 0.13 +0.4 565,249 - GFF3675 0.13 +0.0 565,297 - GFF3675 0.17 +0.4 565,702 - GFF3675 0.51 +0.5 565,702 - GFF3675 0.51 +0.5 565,712 - GFF3675 0.52 -0.3 565,713 + GFF3675 0.52 +0.3 565,713 + GFF3675 0.52 -0.0 565,713 + GFF3675 0.52 +0.5 565,713 + GFF3675 0.52 +0.3 565,713 + GFF3675 0.52 +0.0 565,714 - GFF3675 0.52 +0.6 565,890 + GFF3675 0.67 +0.0 565,890 + GFF3675 0.67 +0.0 565,891 - GFF3675 0.67 +0.5 566,064 + GFF3675 0.82 +0.1 566,064 + GFF3675 0.82 +0.0 566,064 + GFF3675 0.82 -0.1 566,064 + GFF3675 0.82 -0.2 566,064 + GFF3675 0.82 -0.2 566,064 + GFF3675 0.82 +0.1 566,064 + GFF3675 0.82 -0.4 566,065 - GFF3675 0.82 -0.6 566,065 - GFF3675 0.82 -0.3 566,065 - GFF3675 0.82 +0.8 566,065 - GFF3675 0.82 -0.2 566,065 - GFF3675 0.82 +0.6 566,065 - GFF3675 0.82 -0.0 566,665 + -0.5 566,665 + +0.0
Or see this region's nucleotide sequence