Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF363 and GFF364 are separated by 104 nucleotides GFF364 and GFF365 are separated by 60 nucleotides GFF365 and GFF366 overlap by 4 nucleotides GFF366 and GFF367 overlap by 14 nucleotides
GFF363 - Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-), at 25,219 to 26,421
GFF363
GFF364 - FIG00953527: hypothetical protein, at 26,526 to 27,074
GFF364
GFF365 - RNA polymerase sigma factor, at 27,135 to 27,701
GFF365
GFF366 - Probable transmembrane protein, at 27,698 to 28,399
GFF366
GFF367 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 28,386 to 30,659
GFF367
Position (kb) 27
28 Strain fitness (log2 ratio) -1
0
1
2 at 26.215 kb on + strand, within GFF363 at 26.215 kb on + strand, within GFF363 at 26.216 kb on - strand, within GFF363 at 26.216 kb on - strand, within GFF363 at 26.216 kb on - strand, within GFF363 at 26.465 kb on + strand at 26.610 kb on + strand, within GFF364 at 26.610 kb on + strand, within GFF364 at 26.610 kb on + strand, within GFF364 at 26.610 kb on + strand, within GFF364 at 26.610 kb on + strand, within GFF364 at 26.611 kb on - strand, within GFF364 at 26.611 kb on - strand, within GFF364 at 26.611 kb on - strand, within GFF364 at 26.611 kb on - strand, within GFF364 at 26.611 kb on - strand, within GFF364 at 26.697 kb on + strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.799 kb on + strand, within GFF364 at 26.799 kb on + strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.802 kb on + strand, within GFF364 at 26.802 kb on + strand, within GFF364 at 26.803 kb on - strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.953 kb on - strand, within GFF364 at 26.953 kb on - strand, within GFF364 at 27.061 kb on - strand at 27.097 kb on - strand at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.582 kb on + strand, within GFF365 at 27.582 kb on + strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.737 kb on + strand at 27.738 kb on - strand at 27.738 kb on - strand at 28.067 kb on + strand, within GFF366 at 28.067 kb on + strand, within GFF366 at 28.068 kb on - strand, within GFF366 at 28.370 kb on + strand at 28.615 kb on + strand, within GFF367 at 28.615 kb on + strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.637 kb on - strand, within GFF367
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 26,215 + GFF363 0.83 +0.7 26,215 + GFF363 0.83 +0.0 26,216 - GFF363 0.83 +0.1 26,216 - GFF363 0.83 +0.2 26,216 - GFF363 0.83 +0.5 26,465 + -0.3 26,610 + GFF364 0.15 -0.2 26,610 + GFF364 0.15 -0.5 26,610 + GFF364 0.15 +0.3 26,610 + GFF364 0.15 +0.5 26,610 + GFF364 0.15 +0.0 26,611 - GFF364 0.15 -0.4 26,611 - GFF364 0.15 +0.1 26,611 - GFF364 0.15 +0.2 26,611 - GFF364 0.15 -0.8 26,611 - GFF364 0.15 +0.1 26,697 + GFF364 0.31 +0.1 26,698 - GFF364 0.31 -0.5 26,698 - GFF364 0.31 -0.3 26,698 - GFF364 0.31 +0.1 26,698 - GFF364 0.31 -0.2 26,799 + GFF364 0.50 +0.8 26,799 + GFF364 0.50 -0.4 26,800 - GFF364 0.50 +0.3 26,800 - GFF364 0.50 +1.5 26,800 - GFF364 0.50 -0.4 26,802 + GFF364 0.50 -0.2 26,802 + GFF364 0.50 +0.0 26,803 - GFF364 0.50 -0.7 26,952 + GFF364 0.78 +0.1 26,952 + GFF364 0.78 +0.6 26,952 + GFF364 0.78 -0.3 26,953 - GFF364 0.78 -0.1 26,953 - GFF364 0.78 -0.4 27,061 - +0.1 27,097 - +0.8 27,375 + GFF365 0.42 +0.6 27,375 + GFF365 0.42 -0.0 27,375 + GFF365 0.42 +0.3 27,375 + GFF365 0.42 -1.1 27,376 - GFF365 0.43 +0.2 27,376 - GFF365 0.43 +0.1 27,376 - GFF365 0.43 +0.1 27,376 - GFF365 0.43 -0.1 27,376 - GFF365 0.43 +0.9 27,376 - GFF365 0.43 +0.0 27,582 + GFF365 0.79 +0.1 27,582 + GFF365 0.79 +1.2 27,583 - GFF365 0.79 -0.1 27,583 - GFF365 0.79 -0.0 27,737 + +0.2 27,738 - +0.8 27,738 - -0.5 28,067 + GFF366 0.53 +0.7 28,067 + GFF366 0.53 +0.1 28,068 - GFF366 0.53 -0.3 28,370 + -0.5 28,615 + GFF367 0.10 -0.2 28,615 + GFF367 0.10 +0.3 28,616 - GFF367 0.10 +0.0 28,616 - GFF367 0.10 +0.1 28,616 - GFF367 0.10 +2.0 28,616 - GFF367 0.10 +0.4 28,616 - GFF367 0.10 -0.2 28,637 - GFF367 0.11 -1.0
Or see this region's nucleotide sequence