Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3544 and GFF3545 are separated by 15 nucleotides GFF3545 and GFF3546 are separated by 18 nucleotides GFF3546 and GFF3547 overlap by 33 nucleotides GFF3547 and GFF3548 are separated by 96 nucleotides GFF3548 and GFF3549 are separated by 9 nucleotides
GFF3544 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 434,155 to 435,891
GFF3544
GFF3545 - Iron-uptake factor PiuC, at 435,907 to 436,587
GFF3545
GFF3546 - Ferrichrome-iron receptor, at 436,606 to 438,816
GFF3546
GFF3547 - hypothetical protein, at 438,784 to 438,900
GFF3547
GFF3548 - hypothetical protein, at 438,997 to 439,230
GFF3548
GFF3549 - Alcohol dehydrogenase (EC 1.1.1.1), at 439,240 to 440,238
GFF3549
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 435.778 kb on + strand at 435.779 kb on - strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.942 kb on - strand at 436.079 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.311 kb on - strand, within GFF3545 at 436.610 kb on + strand at 436.611 kb on - strand at 436.611 kb on - strand at 436.615 kb on + strand at 436.661 kb on + strand at 436.662 kb on - strand at 436.685 kb on + strand at 436.685 kb on + strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.709 kb on + strand at 436.709 kb on + strand at 436.766 kb on + strand at 436.775 kb on + strand at 436.826 kb on + strand at 436.854 kb on - strand, within GFF3546 at 436.854 kb on - strand, within GFF3546 at 436.892 kb on + strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.351 kb on + strand, within GFF3546 at 437.351 kb on + strand, within GFF3546 at 437.352 kb on - strand, within GFF3546 at 437.412 kb on - strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.526 kb on - strand, within GFF3546 at 437.531 kb on + strand, within GFF3546 at 437.672 kb on + strand, within GFF3546 at 437.672 kb on + strand, within GFF3546 at 437.672 kb on + strand, within GFF3546 at 437.673 kb on - strand, within GFF3546 at 437.673 kb on - strand, within GFF3546 at 437.774 kb on + strand, within GFF3546 at 437.822 kb on + strand, within GFF3546 at 437.822 kb on + strand, within GFF3546 at 437.927 kb on + strand, within GFF3546 at 437.972 kb on + strand, within GFF3546 at 437.973 kb on - strand, within GFF3546 at 438.026 kb on + strand, within GFF3546 at 438.032 kb on + strand, within GFF3546 at 438.033 kb on - strand, within GFF3546 at 438.033 kb on - strand, within GFF3546 at 438.034 kb on - strand, within GFF3546 at 438.123 kb on + strand, within GFF3546 at 438.255 kb on - strand, within GFF3546 at 438.830 kb on + strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.899 kb on - strand at 438.910 kb on - strand at 438.910 kb on - strand at 438.910 kb on - strand at 438.990 kb on + strand at 438.991 kb on - strand at 439.229 kb on - strand at 439.351 kb on + strand, within GFF3549 at 439.352 kb on - strand, within GFF3549 at 439.352 kb on - strand, within GFF3549 at 439.366 kb on + strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 435,778 + -0.3 435,779 - -0.3 435,941 + -0.2 435,941 + +0.1 435,941 + +0.2 435,941 + +0.1 435,941 + -0.4 435,942 - -0.5 436,079 + GFF3545 0.25 +0.0 436,310 + GFF3545 0.59 -0.2 436,310 + GFF3545 0.59 +0.2 436,310 + GFF3545 0.59 +0.7 436,311 - GFF3545 0.59 -0.1 436,610 + +0.0 436,611 - +0.4 436,611 - +0.5 436,615 + -0.0 436,661 + -0.3 436,662 - +0.1 436,685 + -0.0 436,685 + +0.1 436,689 - -0.3 436,689 - +0.2 436,689 - +0.3 436,709 + +0.3 436,709 + +0.5 436,766 + +0.1 436,775 + +0.8 436,826 + +1.0 436,854 - GFF3546 0.11 +0.9 436,854 - GFF3546 0.11 -0.0 436,892 + GFF3546 0.13 +1.0 436,893 - GFF3546 0.13 +0.3 436,893 - GFF3546 0.13 -0.2 436,893 - GFF3546 0.13 +0.0 437,081 + GFF3546 0.21 +0.9 437,081 + GFF3546 0.21 -0.4 437,081 + GFF3546 0.21 -0.3 437,081 + GFF3546 0.21 -0.7 437,081 + GFF3546 0.21 +0.2 437,082 - GFF3546 0.22 -0.1 437,082 - GFF3546 0.22 -0.2 437,082 - GFF3546 0.22 -0.4 437,351 + GFF3546 0.34 +0.4 437,351 + GFF3546 0.34 +1.1 437,352 - GFF3546 0.34 +0.7 437,412 - GFF3546 0.36 -1.6 437,525 + GFF3546 0.42 -0.2 437,525 + GFF3546 0.42 -0.1 437,525 + GFF3546 0.42 +0.0 437,525 + GFF3546 0.42 +1.9 437,525 + GFF3546 0.42 +0.4 437,526 - GFF3546 0.42 -0.5 437,531 + GFF3546 0.42 -0.0 437,672 + GFF3546 0.48 +0.2 437,672 + GFF3546 0.48 -0.1 437,672 + GFF3546 0.48 +0.6 437,673 - GFF3546 0.48 +0.1 437,673 - GFF3546 0.48 -0.2 437,774 + GFF3546 0.53 +0.6 437,822 + GFF3546 0.55 +0.1 437,822 + GFF3546 0.55 +0.8 437,927 + GFF3546 0.60 -1.0 437,972 + GFF3546 0.62 -0.0 437,973 - GFF3546 0.62 +0.3 438,026 + GFF3546 0.64 +0.0 438,032 + GFF3546 0.64 +0.0 438,033 - GFF3546 0.65 +0.8 438,033 - GFF3546 0.65 +0.6 438,034 - GFF3546 0.65 +0.0 438,123 + GFF3546 0.69 +0.3 438,255 - GFF3546 0.75 -0.7 438,830 + GFF3547 0.39 -0.2 438,831 - GFF3547 0.40 +0.3 438,831 - GFF3547 0.40 +0.2 438,831 - GFF3547 0.40 +0.2 438,831 - GFF3547 0.40 +0.9 438,899 - +0.2 438,910 - -0.2 438,910 - -1.2 438,910 - +0.0 438,990 + +0.6 438,991 - -0.3 439,229 - -0.2 439,351 + GFF3549 0.11 +0.4 439,352 - GFF3549 0.11 +0.3 439,352 - GFF3549 0.11 -0.5 439,366 + GFF3549 0.13 -0.5 439,631 - GFF3549 0.39 -0.1 439,631 - GFF3549 0.39 -0.5 439,631 - GFF3549 0.39 +1.3 439,814 - GFF3549 0.57 +0.5 439,814 - GFF3549 0.57 -0.1 439,814 - GFF3549 0.57 +1.6
Or see this region's nucleotide sequence