Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3506 and GFF3507 overlap by 14 nucleotides
GFF3506 - FIG00464231: hypothetical protein, at 386,132 to 389,641
GFF3506
GFF3507 - VrlR-like protein, at 389,628 to 390,404
GFF3507
Position (kb) 386
387
388
389
390 Strain fitness (log2 ratio) -1
0
1 at 385.241 kb on - strand at 385.286 kb on - strand at 385.300 kb on - strand at 385.346 kb on + strand at 385.346 kb on + strand at 385.421 kb on + strand at 385.422 kb on - strand at 385.521 kb on + strand at 385.521 kb on + strand at 385.521 kb on + strand at 385.522 kb on - strand at 385.522 kb on - strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.662 kb on - strand at 385.662 kb on - strand at 385.842 kb on + strand at 385.843 kb on - strand at 385.996 kb on + strand at 385.996 kb on + strand at 385.997 kb on - strand at 385.997 kb on - strand at 385.997 kb on - strand at 386.042 kb on - strand at 386.042 kb on - strand at 386.044 kb on + strand at 386.061 kb on + strand at 386.061 kb on + strand at 386.062 kb on - strand at 386.093 kb on - strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.109 kb on + strand at 386.110 kb on - strand at 386.110 kb on - strand at 386.120 kb on + strand at 386.121 kb on - strand at 386.133 kb on + strand at 386.134 kb on - strand at 386.195 kb on - strand at 386.195 kb on - strand at 386.255 kb on - strand at 386.274 kb on + strand at 386.324 kb on - strand at 386.324 kb on - strand at 386.324 kb on - strand at 386.354 kb on + strand at 386.355 kb on - strand at 386.436 kb on - strand at 387.148 kb on + strand, within GFF3506 at 387.740 kb on + strand, within GFF3506 at 387.741 kb on - strand, within GFF3506 at 387.774 kb on - strand, within GFF3506 at 387.806 kb on - strand, within GFF3506 at 387.990 kb on - strand, within GFF3506 at 388.329 kb on - strand, within GFF3506 at 388.533 kb on + strand, within GFF3506 at 388.533 kb on + strand, within GFF3506 at 388.534 kb on - strand, within GFF3506 at 388.740 kb on - strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.916 kb on + strand, within GFF3506 at 388.917 kb on - strand, within GFF3506 at 389.066 kb on - strand, within GFF3506 at 389.233 kb on + strand, within GFF3506 at 389.301 kb on + strand at 389.460 kb on - strand at 389.570 kb on + strand at 389.570 kb on + strand at 389.570 kb on + strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.659 kb on + strand at 389.659 kb on + strand at 389.660 kb on - strand at 389.711 kb on - strand, within GFF3507 at 389.726 kb on + strand, within GFF3507 at 389.727 kb on - strand, within GFF3507 at 390.226 kb on + strand, within GFF3507 at 390.241 kb on - strand, within GFF3507 at 390.271 kb on + strand, within GFF3507 at 390.337 kb on + strand at 390.337 kb on + strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.346 kb on + strand at 390.346 kb on + strand at 390.347 kb on - strand at 390.394 kb on + strand at 390.394 kb on + strand at 390.394 kb on + strand at 390.395 kb on - strand at 390.395 kb on - strand at 390.397 kb on - strand at 390.418 kb on + strand at 390.419 kb on - strand at 390.518 kb on + strand at 390.518 kb on + strand at 390.518 kb on + strand at 390.519 kb on - strand at 390.555 kb on - strand at 390.581 kb on + strand at 390.581 kb on + strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 385,241 - +0.2 385,286 - -0.4 385,300 - +0.7 385,346 + +0.4 385,346 + -0.3 385,421 + +0.1 385,422 - +0.1 385,521 + +0.1 385,521 + +0.4 385,521 + +0.3 385,522 - -0.1 385,522 - +0.1 385,661 + +0.3 385,661 + -0.8 385,661 + +0.0 385,661 + +0.1 385,662 - -0.3 385,662 - -0.0 385,842 + +0.4 385,843 - +0.2 385,996 + -0.4 385,996 + +0.3 385,997 - +0.5 385,997 - +1.3 385,997 - +0.1 386,042 - -0.2 386,042 - +0.6 386,044 + +0.2 386,061 + -0.7 386,061 + -1.4 386,062 - +0.0 386,093 - -0.2 386,109 + -0.1 386,109 + -0.1 386,109 + -0.2 386,109 + +0.1 386,109 + -0.9 386,109 + +0.3 386,110 - -0.2 386,110 - -0.2 386,120 + -0.2 386,121 - -0.2 386,133 + -0.1 386,134 - +0.1 386,195 - -0.1 386,195 - +0.1 386,255 - -1.2 386,274 + +0.1 386,324 - -0.3 386,324 - +0.7 386,324 - -0.3 386,354 + +0.3 386,355 - +0.1 386,436 - -0.3 387,148 + GFF3506 0.29 +0.6 387,740 + GFF3506 0.46 +0.2 387,741 - GFF3506 0.46 +1.7 387,774 - GFF3506 0.47 +0.9 387,806 - GFF3506 0.48 -0.2 387,990 - GFF3506 0.53 +0.1 388,329 - GFF3506 0.63 +0.6 388,533 + GFF3506 0.68 -0.3 388,533 + GFF3506 0.68 -0.1 388,534 - GFF3506 0.68 -0.2 388,740 - GFF3506 0.74 +1.2 388,766 + GFF3506 0.75 -0.2 388,766 + GFF3506 0.75 -0.3 388,766 + GFF3506 0.75 +0.7 388,766 + GFF3506 0.75 +0.4 388,767 - GFF3506 0.75 +0.9 388,767 - GFF3506 0.75 +0.8 388,767 - GFF3506 0.75 -0.0 388,767 - GFF3506 0.75 +0.3 388,916 + GFF3506 0.79 +0.1 388,917 - GFF3506 0.79 +0.3 389,066 - GFF3506 0.84 +0.1 389,233 + GFF3506 0.88 +1.3 389,301 + -0.0 389,460 - +0.6 389,570 + -0.2 389,570 + -0.0 389,570 + -0.6 389,571 - -0.6 389,571 - -0.4 389,571 - -0.3 389,571 - +0.3 389,571 - -0.1 389,659 + -0.1 389,659 + +0.4 389,660 - -1.2 389,711 - GFF3507 0.11 -0.3 389,726 + GFF3507 0.13 +0.8 389,727 - GFF3507 0.13 -0.1 390,226 + GFF3507 0.77 +0.7 390,241 - GFF3507 0.79 +0.6 390,271 + GFF3507 0.83 -0.2 390,337 + +0.3 390,337 + -0.3 390,338 - +0.3 390,338 - +0.6 390,338 - +0.0 390,338 - +0.3 390,338 - +0.2 390,346 + -0.0 390,346 + -0.1 390,347 - -0.2 390,394 + -1.2 390,394 + +0.3 390,394 + -0.0 390,395 - +0.0 390,395 - +0.4 390,397 - +0.7 390,418 + -0.2 390,419 - -0.5 390,518 + -0.4 390,518 + +0.7 390,518 + -0.1 390,519 - -0.4 390,555 - +0.7 390,581 + -0.1 390,581 + -0.1 390,582 - -0.2 390,582 - -0.4 390,582 - -0.6
Or see this region's nucleotide sequence