Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3394 and GFF3395 are separated by 6 nucleotides GFF3395 and GFF3396 are separated by 4 nucleotides GFF3396 and GFF3397 overlap by 4 nucleotides
GFF3394 - Dioxygenases related to 2-nitropropane dioxygenase, at 278,657 to 279,640
GFF3394
GFF3395 - Enoyl-CoA hydratase (EC 4.2.1.17), at 279,647 to 280,438
GFF3395
GFF3396 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 280,443 to 281,264
GFF3396
GFF3397 - hypothetical protein, at 281,261 to 282,493
GFF3397
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.757 kb on - strand, within GFF3395 at 279.990 kb on + strand, within GFF3395 at 279.991 kb on - strand, within GFF3395 at 280.162 kb on - strand, within GFF3395 at 280.525 kb on - strand at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.603 kb on + strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 281.409 kb on + strand, within GFF3397 at 281.598 kb on + strand, within GFF3397 at 281.599 kb on - strand, within GFF3397 at 281.656 kb on - strand, within GFF3397 at 281.656 kb on - strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 282.250 kb on - strand, within GFF3397
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 279,757 - GFF3395 0.14 +0.9 279,990 + GFF3395 0.43 +2.4 279,991 - GFF3395 0.43 -2.3 280,162 - GFF3395 0.65 -0.7 280,525 - -0.2 280,526 - GFF3396 0.10 +0.3 280,526 - GFF3396 0.10 -0.3 280,526 - GFF3396 0.10 -0.3 280,526 - GFF3396 0.10 +1.1 280,603 + GFF3396 0.19 -0.0 280,604 - GFF3396 0.20 +0.5 280,604 - GFF3396 0.20 +1.4 280,604 - GFF3396 0.20 -1.9 280,816 + GFF3396 0.45 +0.7 280,816 + GFF3396 0.45 +1.2 281,409 + GFF3397 0.12 -0.5 281,598 + GFF3397 0.27 +0.3 281,599 - GFF3397 0.27 -0.4 281,656 - GFF3397 0.32 +0.0 281,656 - GFF3397 0.32 +0.3 281,874 + GFF3397 0.50 -0.3 281,874 + GFF3397 0.50 +0.1 281,874 + GFF3397 0.50 +0.8 281,874 + GFF3397 0.50 -0.1 281,874 + GFF3397 0.50 +0.6 281,875 - GFF3397 0.50 +0.4 281,875 - GFF3397 0.50 +0.3 281,875 - GFF3397 0.50 -0.6 282,250 - GFF3397 0.80 -0.9
Or see this region's nucleotide sequence