Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3288 and GFF3289 are separated by 11 nucleotides GFF3289 and GFF3290 overlap by 4 nucleotides GFF3290 and GFF3291 are separated by 88 nucleotides
GFF3288 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 173,494 to 174,210
GFF3288
GFF3289 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 174,222 to 175,139
GFF3289
GFF3290 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 175,136 to 176,011
GFF3290
GFF3291 - Putative branched-chain amino acid transporter substrate-binding protein, at 176,100 to 177,314
GFF3291
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.323 kb on - strand, within GFF3289 at 174.476 kb on - strand, within GFF3289 at 174.754 kb on + strand, within GFF3289 at 174.932 kb on - strand, within GFF3289 at 174.973 kb on + strand, within GFF3289 at 174.974 kb on - strand, within GFF3289 at 175.630 kb on - strand, within GFF3290 at 175.635 kb on + strand, within GFF3290 at 175.641 kb on + strand, within GFF3290 at 175.641 kb on + strand, within GFF3290 at 175.644 kb on + strand, within GFF3290 at 175.776 kb on + strand, within GFF3290 at 175.777 kb on - strand, within GFF3290 at 175.863 kb on + strand, within GFF3290 at 175.930 kb on - strand at 175.963 kb on - strand at 176.368 kb on + strand, within GFF3291 at 176.369 kb on - strand, within GFF3291 at 176.521 kb on + strand, within GFF3291 at 176.522 kb on - strand, within GFF3291 at 176.587 kb on + strand, within GFF3291 at 176.669 kb on - strand, within GFF3291 at 176.680 kb on + strand, within GFF3291
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 174,323 - GFF3289 0.11 +0.1 174,476 - GFF3289 0.28 -0.3 174,754 + GFF3289 0.58 +0.1 174,932 - GFF3289 0.77 -2.4 174,973 + GFF3289 0.82 -1.6 174,974 - GFF3289 0.82 +0.2 175,630 - GFF3290 0.56 -0.9 175,635 + GFF3290 0.57 -0.1 175,641 + GFF3290 0.58 +0.1 175,641 + GFF3290 0.58 +1.3 175,644 + GFF3290 0.58 +1.1 175,776 + GFF3290 0.73 +0.3 175,777 - GFF3290 0.73 +0.4 175,863 + GFF3290 0.83 +0.0 175,930 - -0.3 175,963 - -0.0 176,368 + GFF3291 0.22 -0.4 176,369 - GFF3291 0.22 +0.2 176,521 + GFF3291 0.35 -0.1 176,522 - GFF3291 0.35 -0.1 176,587 + GFF3291 0.40 -0.4 176,669 - GFF3291 0.47 +1.2 176,680 + GFF3291 0.48 +0.1
Or see this region's nucleotide sequence