Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3280

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
164,534	+				-0.5
164,534	+				+0.3
164,534	+				+0.2
164,534	+				-0.7
164,534	+				-0.1
164,535	-				+0.2
164,571	+				-0.6
164,571	+				-1.4
165,114	+		GFF3279	0.83	+0.7
165,115	-		GFF3279	0.83	+0.3
165,144	+		GFF3279	0.87	-0.8
165,429	+		GFF3280	0.29	+1.1
165,454	-		GFF3280	0.41	+0.4
165,498	+		GFF3280	0.62	-0.2
165,564	+				+0.4
165,564	+				-0.6
165,958	+		GFF3281	0.37	-0.4
165,959	-		GFF3281	0.37	-0.2
165,961	+		GFF3281	0.37	-0.0
165,962	-		GFF3281	0.37	+0.4
166,099	+		GFF3281	0.51	-1.6
166,100	-		GFF3281	0.51	+0.1
166,301	-		GFF3281	0.71	-0.4