Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF30 and GFF31 overlap by 4 nucleotides GFF31 and GFF32 are separated by 8 nucleotides GFF32 and GFF33 overlap by 4 nucleotides
GFF30 - Cytosine deaminase (EC 3.5.4.1), at 27,139 to 28,488
GFF30
GFF31 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 28,485 to 29,273
GFF31
GFF32 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 29,282 to 30,058
GFF32
GFF33 - ABC transporter substrate-binding protein, at 30,055 to 31,065
GFF33
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 28.558 kb on + strand at 28.747 kb on + strand, within GFF31 at 28.805 kb on - strand, within GFF31 at 28.993 kb on + strand, within GFF31 at 28.994 kb on - strand, within GFF31 at 28.994 kb on - strand, within GFF31 at 29.353 kb on - strand at 29.463 kb on + strand, within GFF32 at 29.463 kb on + strand, within GFF32 at 30.155 kb on + strand at 30.156 kb on - strand, within GFF33 at 30.326 kb on + strand, within GFF33 at 30.332 kb on + strand, within GFF33 at 30.333 kb on - strand, within GFF33 at 30.428 kb on + strand, within GFF33 at 30.429 kb on - strand, within GFF33 at 30.570 kb on - strand, within GFF33 at 30.570 kb on - strand, within GFF33 at 30.893 kb on + strand, within GFF33 at 30.893 kb on + strand, within GFF33
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 28,558 + -0.7 28,747 + GFF31 0.33 +0.3 28,805 - GFF31 0.41 +0.7 28,993 + GFF31 0.64 -0.3 28,994 - GFF31 0.65 +0.3 28,994 - GFF31 0.65 +0.2 29,353 - -0.6 29,463 + GFF32 0.23 -0.1 29,463 + GFF32 0.23 +0.7 30,155 + -0.4 30,156 - GFF33 0.10 +0.2 30,326 + GFF33 0.27 +1.5 30,332 + GFF33 0.27 -0.2 30,333 - GFF33 0.27 -0.8 30,428 + GFF33 0.37 -0.2 30,429 - GFF33 0.37 +0.3 30,570 - GFF33 0.51 +0.5 30,570 - GFF33 0.51 -0.7 30,893 + GFF33 0.83 +0.2 30,893 + GFF33 0.83 +0.1
Or see this region's nucleotide sequence