Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2810

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2809 and GFF2810 overlap by 1 nucleotidesGFF2810 and GFF2811 overlap by 4 nucleotidesGFF2811 and GFF2812 overlap by 8 nucleotides GFF2809 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 408,141 to 409,217 GFF2809 GFF2810 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 409,217 to 410,293 GFF2810 GFF2811 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 410,290 to 411,183 GFF2811 GFF2812 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 411,176 to 411,988 GFF2812 Position (kb) 409 410 411Strain fitness (log2 ratio) -1 0 1 2at 408.379 kb on - strand, within GFF2809at 408.379 kb on - strand, within GFF2809at 408.396 kb on + strand, within GFF2809at 408.397 kb on - strand, within GFF2809at 408.397 kb on - strand, within GFF2809at 408.627 kb on + strand, within GFF2809at 408.628 kb on - strand, within GFF2809at 408.628 kb on - strand, within GFF2809at 408.696 kb on + strand, within GFF2809at 408.697 kb on - strand, within GFF2809at 409.134 kb on + strandat 409.134 kb on + strandat 409.135 kb on - strandat 409.280 kb on + strandat 409.325 kb on + strand, within GFF2810at 409.490 kb on + strand, within GFF2810at 409.490 kb on + strand, within GFF2810at 409.490 kb on + strand, within GFF2810at 409.490 kb on + strand, within GFF2810at 409.491 kb on - strand, within GFF2810at 409.491 kb on - strand, within GFF2810at 409.799 kb on + strand, within GFF2810at 409.799 kb on + strand, within GFF2810at 409.800 kb on - strand, within GFF2810at 410.140 kb on + strand, within GFF2810at 410.140 kb on + strand, within GFF2810at 410.141 kb on - strand, within GFF2810at 410.141 kb on - strand, within GFF2810at 410.144 kb on + strand, within GFF2810at 410.144 kb on + strand, within GFF2810at 410.144 kb on + strand, within GFF2810at 410.145 kb on - strand, within GFF2810at 410.145 kb on - strand, within GFF2810at 410.145 kb on - strand, within GFF2810at 410.145 kb on - strand, within GFF2810at 410.145 kb on - strand, within GFF2810at 410.267 kb on + strandat 410.267 kb on + strandat 410.298 kb on + strandat 410.298 kb on + strandat 410.298 kb on + strandat 410.298 kb on + strandat 410.298 kb on + strandat 410.299 kb on - strandat 410.299 kb on - strandat 410.299 kb on - strandat 410.299 kb on - strandat 410.385 kb on + strand, within GFF2811at 410.399 kb on - strand, within GFF2811at 410.695 kb on + strand, within GFF2811at 410.722 kb on + strand, within GFF2811at 410.723 kb on - strand, within GFF2811at 410.723 kb on - strand, within GFF2811at 410.729 kb on - strand, within GFF2811at 410.842 kb on + strand, within GFF2811at 410.843 kb on - strand, within GFF2811at 410.843 kb on - strand, within GFF2811at 410.843 kb on - strand, within GFF2811at 410.845 kb on + strand, within GFF2811at 410.845 kb on + strand, within GFF2811at 410.846 kb on - strand, within GFF2811at 410.968 kb on + strand, within GFF2811at 411.094 kb on + strandat 411.095 kb on - strandat 411.130 kb on + strandat 411.131 kb on - strandat 411.131 kb on - strandat 411.131 kb on - strandat 411.181 kb on + strandat 411.181 kb on + strandat 411.182 kb on - strandat 411.222 kb on - strandat 411.248 kb on + strandat 411.249 kb on - strandat 411.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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408,379 - GFF2809 0.22 +0.4
408,379 - GFF2809 0.22 +1.9
408,396 + GFF2809 0.24 +0.1
408,397 - GFF2809 0.24 -0.7
408,397 - GFF2809 0.24 -0.0
408,627 + GFF2809 0.45 +0.1
408,628 - GFF2809 0.45 -0.1
408,628 - GFF2809 0.45 +0.5
408,696 + GFF2809 0.52 -0.7
408,697 - GFF2809 0.52 -0.2
409,134 + +0.2
409,134 + -0.2
409,135 - -0.2
409,280 + -0.6
409,325 + GFF2810 0.10 -0.1
409,490 + GFF2810 0.25 +0.2
409,490 + GFF2810 0.25 -0.8
409,490 + GFF2810 0.25 -0.5
409,490 + GFF2810 0.25 -0.1
409,491 - GFF2810 0.25 +0.0
409,491 - GFF2810 0.25 -0.3
409,799 + GFF2810 0.54 -0.2
409,799 + GFF2810 0.54 +0.8
409,800 - GFF2810 0.54 -1.5
410,140 + GFF2810 0.86 +0.5
410,140 + GFF2810 0.86 -0.1
410,141 - GFF2810 0.86 -1.1
410,141 - GFF2810 0.86 +0.2
410,144 + GFF2810 0.86 -0.1
410,144 + GFF2810 0.86 +0.7
410,144 + GFF2810 0.86 -0.1
410,145 - GFF2810 0.86 +0.3
410,145 - GFF2810 0.86 -0.4
410,145 - GFF2810 0.86 -0.0
410,145 - GFF2810 0.86 +0.5
410,145 - GFF2810 0.86 +0.4
410,267 + -0.1
410,267 + -0.1
410,298 + -0.3
410,298 + +0.7
410,298 + -0.5
410,298 + +0.5
410,298 + -0.8
410,299 - -0.1
410,299 - +0.3
410,299 - +0.9
410,299 - -0.3
410,385 + GFF2811 0.11 -0.1
410,399 - GFF2811 0.12 -0.5
410,695 + GFF2811 0.45 -0.3
410,722 + GFF2811 0.48 +1.1
410,723 - GFF2811 0.48 +1.1
410,723 - GFF2811 0.48 -0.3
410,729 - GFF2811 0.49 -0.4
410,842 + GFF2811 0.62 +0.2
410,843 - GFF2811 0.62 +0.2
410,843 - GFF2811 0.62 -0.4
410,843 - GFF2811 0.62 -0.9
410,845 + GFF2811 0.62 -0.5
410,845 + GFF2811 0.62 -0.0
410,846 - GFF2811 0.62 -1.6
410,968 + GFF2811 0.76 -0.2
411,094 + +0.8
411,095 - +0.7
411,130 + +0.5
411,131 - -0.6
411,131 - +1.5
411,131 - -0.1
411,181 + -0.7
411,181 + -1.1
411,182 - +0.2
411,222 - -0.6
411,248 + -0.1
411,249 - +0.0
411,249 - +0.2

Or see this region's nucleotide sequence