Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2803

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2802 and GFF2803 are separated by 55 nucleotidesGFF2803 and GFF2804 are separated by 34 nucleotidesGFF2804 and GFF2805 overlap by 4 nucleotides GFF2802 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 400,169 to 402,265 GFF2802 GFF2803 - Hydrogen peroxide-inducible genes activator, at 402,321 to 403,280 GFF2803 GFF2804 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 403,315 to 403,821 GFF2804 GFF2805 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 403,818 to 404,672 GFF2805 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1at 401.489 kb on + strand, within GFF2802at 401.489 kb on + strand, within GFF2802at 401.489 kb on + strand, within GFF2802at 401.489 kb on + strand, within GFF2802at 401.490 kb on - strand, within GFF2802at 401.556 kb on - strand, within GFF2802at 401.630 kb on + strand, within GFF2802at 401.631 kb on - strand, within GFF2802at 401.963 kb on + strand, within GFF2802at 401.963 kb on + strand, within GFF2802at 402.252 kb on - strandat 402.312 kb on + strandat 402.312 kb on + strandat 402.312 kb on + strandat 402.342 kb on + strandat 402.342 kb on + strandat 402.342 kb on + strandat 402.343 kb on - strandat 402.343 kb on - strandat 402.343 kb on - strandat 402.615 kb on + strand, within GFF2803at 402.615 kb on + strand, within GFF2803at 402.616 kb on - strand, within GFF2803at 402.616 kb on - strand, within GFF2803at 402.616 kb on - strand, within GFF2803at 402.616 kb on - strand, within GFF2803at 402.630 kb on + strand, within GFF2803at 402.630 kb on + strand, within GFF2803at 402.630 kb on + strand, within GFF2803at 402.802 kb on - strand, within GFF2803at 403.131 kb on + strand, within GFF2803at 403.131 kb on + strand, within GFF2803at 403.132 kb on - strand, within GFF2803at 403.132 kb on - strand, within GFF2803at 403.210 kb on - strandat 403.242 kb on + strandat 403.242 kb on + strandat 403.242 kb on + strandat 403.243 kb on - strandat 403.243 kb on - strandat 403.243 kb on - strandat 403.243 kb on - strandat 403.243 kb on - strandat 403.278 kb on + strandat 403.278 kb on + strandat 403.279 kb on - strandat 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.423 kb on + strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.424 kb on - strand, within GFF2804at 403.432 kb on + strand, within GFF2804at 403.433 kb on - strand, within GFF2804at 403.433 kb on - strand, within GFF2804at 403.433 kb on - strand, within GFF2804at 403.511 kb on - strand, within GFF2804at 403.511 kb on - strand, within GFF2804at 403.586 kb on - strand, within GFF2804at 403.586 kb on - strand, within GFF2804at 403.586 kb on - strand, within GFF2804

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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401,489 + GFF2802 0.63 -0.4
401,489 + GFF2802 0.63 -0.8
401,489 + GFF2802 0.63 -1.1
401,489 + GFF2802 0.63 -0.3
401,490 - GFF2802 0.63 -0.2
401,556 - GFF2802 0.66 -0.4
401,630 + GFF2802 0.70 -0.9
401,631 - GFF2802 0.70 +0.1
401,963 + GFF2802 0.86 +0.5
401,963 + GFF2802 0.86 -0.6
402,252 - -0.9
402,312 + -0.3
402,312 + -0.1
402,312 + -0.6
402,342 + -2.6
402,342 + -1.6
402,342 + -0.3
402,343 - -0.7
402,343 - +0.8
402,343 - -0.5
402,615 + GFF2803 0.31 -0.4
402,615 + GFF2803 0.31 -0.9
402,616 - GFF2803 0.31 -0.8
402,616 - GFF2803 0.31 -0.4
402,616 - GFF2803 0.31 -1.1
402,616 - GFF2803 0.31 -0.4
402,630 + GFF2803 0.32 -0.2
402,630 + GFF2803 0.32 -0.9
402,630 + GFF2803 0.32 -0.4
402,802 - GFF2803 0.50 -0.3
403,131 + GFF2803 0.84 -0.9
403,131 + GFF2803 0.84 +0.5
403,132 - GFF2803 0.84 +0.3
403,132 - GFF2803 0.84 +0.4
403,210 - -0.9
403,242 + +0.4
403,242 + -0.3
403,242 + -0.1
403,243 - -0.7
403,243 - +0.1
403,243 - -1.9
403,243 - -0.7
403,243 - -0.9
403,278 + +0.4
403,278 + -0.2
403,279 - +0.5
403,423 + GFF2804 0.21 +0.3
403,423 + GFF2804 0.21 -0.5
403,423 + GFF2804 0.21 -1.4
403,423 + GFF2804 0.21 -0.1
403,423 + GFF2804 0.21 -0.5
403,423 + GFF2804 0.21 -0.1
403,423 + GFF2804 0.21 -1.0
403,424 - GFF2804 0.21 -0.7
403,424 - GFF2804 0.21 -1.3
403,424 - GFF2804 0.21 -0.3
403,424 - GFF2804 0.21 -0.8
403,424 - GFF2804 0.21 -0.7
403,424 - GFF2804 0.21 -1.4
403,424 - GFF2804 0.21 -1.8
403,424 - GFF2804 0.21 +0.5
403,432 + GFF2804 0.23 -0.8
403,433 - GFF2804 0.23 -0.4
403,433 - GFF2804 0.23 -1.6
403,433 - GFF2804 0.23 -0.7
403,511 - GFF2804 0.39 -0.6
403,511 - GFF2804 0.39 -1.9
403,586 - GFF2804 0.53 -2.7
403,586 - GFF2804 0.53 -2.1
403,586 - GFF2804 0.53 -2.6

Or see this region's nucleotide sequence