Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2686 and GFF2687 are separated by 31 nucleotides GFF2687 and GFF2688 are separated by 88 nucleotides GFF2688 and GFF2689 are separated by 13 nucleotides
GFF2686 - putative exported protein, at 277,305 to 278,270
GFF2686
GFF2687 - putative exported protein, at 278,302 to 279,267
GFF2687
GFF2688 - Transcriptional regulator, MarR family, at 279,356 to 279,865
GFF2688
GFF2689 - Glycine betaine transporter OpuD, at 279,879 to 281,393
GFF2689
Position (kb) 278
279
280 Strain fitness (log2 ratio) -1
0
1 at 277.354 kb on + strand at 277.523 kb on - strand, within GFF2686 at 277.523 kb on - strand, within GFF2686 at 277.523 kb on - strand, within GFF2686 at 277.957 kb on + strand, within GFF2686 at 277.957 kb on + strand, within GFF2686 at 278.897 kb on + strand, within GFF2687 at 278.898 kb on - strand, within GFF2687 at 278.942 kb on + strand, within GFF2687 at 279.317 kb on + strand at 279.317 kb on + strand at 279.317 kb on + strand at 279.317 kb on + strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.318 kb on - strand at 279.416 kb on + strand, within GFF2688 at 279.417 kb on - strand, within GFF2688 at 279.707 kb on + strand, within GFF2688 at 280.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 277,354 + +0.0 277,523 - GFF2686 0.23 +0.4 277,523 - GFF2686 0.23 -0.1 277,523 - GFF2686 0.23 -0.7 277,957 + GFF2686 0.67 +0.2 277,957 + GFF2686 0.67 -0.2 278,897 + GFF2687 0.62 +0.5 278,898 - GFF2687 0.62 +0.0 278,942 + GFF2687 0.66 +0.4 279,317 + -0.4 279,317 + -0.1 279,317 + -0.6 279,317 + -0.3 279,318 - +1.7 279,318 - -0.3 279,318 - +0.1 279,318 - -0.1 279,318 - -0.3 279,318 - +0.5 279,318 - +0.2 279,318 - -0.2 279,416 + GFF2688 0.12 -1.4 279,417 - GFF2688 0.12 +0.3 279,707 + GFF2688 0.69 -0.3 280,005 + +0.2
Or see this region's nucleotide sequence