Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2448 and GFF2449 are separated by 6 nucleotides GFF2449 and GFF2450 are separated by 205 nucleotides GFF2450 and GFF2451 are separated by 39 nucleotides
GFF2448 - Methionine biosynthesis protein MetW, at 28,911 to 29,492
GFF2448
GFF2449 - Transglutaminase-like domain, at 29,499 to 30,188
GFF2449
GFF2450 - Positive regulator of CheA protein activity (CheW), at 30,394 to 30,921
GFF2450
GFF2451 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 30,961 to 32,793
GFF2451
Position (kb) 30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.651 kb on - strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.690 kb on - strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 30.025 kb on + strand, within GFF2449 at 30.025 kb on + strand, within GFF2449 at 30.026 kb on - strand, within GFF2449 at 30.026 kb on - strand, within GFF2449 at 30.199 kb on + strand at 30.230 kb on + strand at 30.230 kb on + strand at 30.231 kb on - strand at 30.231 kb on - strand at 30.270 kb on - strand at 30.270 kb on - strand at 30.270 kb on - strand at 30.323 kb on + strand at 30.323 kb on + strand at 30.324 kb on - strand at 30.324 kb on - strand at 30.376 kb on + strand at 30.377 kb on - strand at 30.505 kb on + strand, within GFF2450 at 30.505 kb on + strand, within GFF2450 at 30.506 kb on - strand, within GFF2450 at 30.506 kb on - strand, within GFF2450 at 30.506 kb on - strand, within GFF2450 at 30.506 kb on - strand, within GFF2450 at 30.544 kb on + strand, within GFF2450 at 30.544 kb on + strand, within GFF2450 at 30.544 kb on + strand, within GFF2450 at 30.664 kb on + strand, within GFF2450 at 30.664 kb on + strand, within GFF2450 at 30.664 kb on + strand, within GFF2450 at 30.664 kb on + strand, within GFF2450 at 30.664 kb on + strand, within GFF2450 at 30.665 kb on - strand, within GFF2450 at 30.919 kb on + strand at 30.919 kb on + strand at 30.920 kb on - strand at 31.187 kb on + strand, within GFF2451 at 31.492 kb on + strand, within GFF2451 at 31.493 kb on - strand, within GFF2451 at 31.493 kb on - strand, within GFF2451 at 31.505 kb on - strand, within GFF2451 at 31.633 kb on + strand, within GFF2451 at 31.633 kb on + strand, within GFF2451 at 31.633 kb on + strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.634 kb on - strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.906 kb on + strand, within GFF2451 at 31.907 kb on - strand, within GFF2451 at 31.907 kb on - strand, within GFF2451
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 29,650 + GFF2449 0.22 -1.7 29,650 + GFF2449 0.22 +1.0 29,650 + GFF2449 0.22 +0.7 29,650 + GFF2449 0.22 +0.2 29,650 + GFF2449 0.22 +0.8 29,650 + GFF2449 0.22 -0.6 29,650 + GFF2449 0.22 +0.0 29,651 - GFF2449 0.22 -0.8 29,689 + GFF2449 0.28 -0.1 29,689 + GFF2449 0.28 +0.4 29,689 + GFF2449 0.28 -0.2 29,689 + GFF2449 0.28 -0.0 29,690 - GFF2449 0.28 +0.2 29,959 + GFF2449 0.67 +0.7 29,959 + GFF2449 0.67 +0.1 29,959 + GFF2449 0.67 -0.0 30,025 + GFF2449 0.76 -0.5 30,025 + GFF2449 0.76 -2.4 30,026 - GFF2449 0.76 -0.1 30,026 - GFF2449 0.76 -0.9 30,199 + +0.2 30,230 + -1.0 30,230 + +0.1 30,231 - -0.3 30,231 - +0.4 30,270 - -0.0 30,270 - -0.0 30,270 - +0.4 30,323 + -0.8 30,323 + +0.2 30,324 - -0.5 30,324 - +0.2 30,376 + +1.1 30,377 - +0.5 30,505 + GFF2450 0.21 +0.8 30,505 + GFF2450 0.21 -0.3 30,506 - GFF2450 0.21 -0.1 30,506 - GFF2450 0.21 +0.2 30,506 - GFF2450 0.21 +1.2 30,506 - GFF2450 0.21 +0.4 30,544 + GFF2450 0.28 +0.4 30,544 + GFF2450 0.28 +0.2 30,544 + GFF2450 0.28 +0.3 30,664 + GFF2450 0.51 +0.0 30,664 + GFF2450 0.51 +0.3 30,664 + GFF2450 0.51 +0.8 30,664 + GFF2450 0.51 +0.7 30,664 + GFF2450 0.51 -0.2 30,665 - GFF2450 0.51 -0.1 30,919 + -0.0 30,919 + -0.3 30,920 - +0.1 31,187 + GFF2451 0.12 -0.0 31,492 + GFF2451 0.29 -0.0 31,493 - GFF2451 0.29 -0.3 31,493 - GFF2451 0.29 +1.3 31,505 - GFF2451 0.30 -1.0 31,633 + GFF2451 0.37 +0.6 31,633 + GFF2451 0.37 +0.2 31,633 + GFF2451 0.37 -0.1 31,634 - GFF2451 0.37 +0.4 31,634 - GFF2451 0.37 +0.1 31,634 - GFF2451 0.37 +0.3 31,634 - GFF2451 0.37 +1.8 31,634 - GFF2451 0.37 -0.2 31,634 - GFF2451 0.37 +0.3 31,634 - GFF2451 0.37 -0.2 31,634 - GFF2451 0.37 +0.3 31,634 - GFF2451 0.37 -0.4 31,634 - GFF2451 0.37 -0.4 31,906 + GFF2451 0.52 +0.4 31,906 + GFF2451 0.52 +0.0 31,906 + GFF2451 0.52 -0.0 31,906 + GFF2451 0.52 +1.0 31,906 + GFF2451 0.52 -0.6 31,906 + GFF2451 0.52 -0.1 31,906 + GFF2451 0.52 +0.0 31,906 + GFF2451 0.52 -0.1 31,907 - GFF2451 0.52 -0.9 31,907 - GFF2451 0.52 -0.6
Or see this region's nucleotide sequence