Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2232

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,116,475	-		GFF2230	0.76	-1.7
1,116,475	-		GFF2230	0.76	+0.3
1,116,669	+				+0.2
1,116,669	+				-0.1
1,116,669	+				+0.6
1,116,670	-				-0.8
1,116,670	-				-0.2
1,116,670	-				+0.6
1,116,670	-				+0.5
1,116,670	-				-0.9
1,116,670	-				+0.6
1,116,670	-				+0.6
1,116,670	-				-0.5
1,116,717	+				+0.6
1,116,717	+				-1.6
1,116,718	-				-0.3
1,116,718	-				+0.1
1,116,718	-				+1.6
1,116,755	-				+0.3
1,116,817	-		GFF2231	0.46	+0.7
1,116,834	+		GFF2231	0.58	+1.2
1,116,835	-		GFF2231	0.58	+0.0
1,116,835	-		GFF2231	0.58	-0.2
1,116,835	-		GFF2231	0.58	-0.8
1,116,897	-				-0.8
1,116,897	-				+0.3
1,116,920	+				-1.1
1,116,920	+				+0.5
1,116,921	-				+0.3
1,116,973	+				+0.0
1,116,973	+				+0.1
1,116,973	+				-0.1
1,116,974	-				+0.2
1,116,974	-				+0.0
1,116,992	+				-1.0
1,116,992	+				-0.3
1,116,993	-				+0.2
1,117,003	+				-0.4
1,117,003	+				-0.2
1,117,003	+				-0.4
1,117,003	+				-0.3
1,117,003	+				+0.6
1,117,003	+				-0.1
1,117,003	+				+0.0
1,117,003	+				-1.4
1,117,004	-				-0.2
1,117,004	-				-0.2
1,117,004	-				+0.4
1,117,004	-				-0.1
1,117,004	-				-0.2
1,117,004	-				-0.7
1,117,004	-				+0.1
1,117,004	-				-0.6
1,117,010	-				-0.3
1,117,030	+				+0.1
1,117,030	+				-0.3
1,117,030	+				+0.5
1,117,031	-				-0.5
1,117,031	-				-0.5
1,117,031	-				-0.3
1,117,107	+				-0.9
1,117,108	-				-0.3
1,117,108	-				+1.0
1,117,121	+				+0.1
1,117,121	+				-0.1
1,117,121	+				-0.3
1,117,121	+				+0.1
1,117,122	-				-0.2
1,117,122	-				-0.2
1,117,122	-				-0.2
1,117,122	-				+0.4
1,117,122	-				+1.2
1,117,122	-				+0.6
1,117,122	-				+1.6
1,117,122	-				-1.0
1,117,122	-				+0.4
1,117,122	-				+0.5
1,117,122	-				-0.1
1,117,125	+				-0.6
1,117,125	+				+0.4
1,117,125	+				+0.3
1,117,125	+				-0.7
1,117,125	+				+0.8
1,117,125	+				-0.2
1,117,125	+				+0.3
1,117,125	+				-0.1
1,117,126	-				-0.3
1,117,126	-				-0.1
1,117,126	-				+1.0
1,117,126	-				+0.1
1,117,126	-				-0.3
1,117,126	-				-0.9
1,117,126	-				+0.2
1,117,126	-				-0.0
1,117,126	-				-0.6
1,117,126	-				+0.0
1,117,126	-				-0.5
1,117,126	-				+0.0
1,117,126	-				-0.9
1,117,131	+				+0.7
1,117,139	+				-0.5
1,117,140	-				-0.4
1,117,219	+				-1.4
1,117,220	-				-0.9
1,117,220	-				-0.1
1,117,271	-				+0.3
1,117,356	+				+0.0
1,117,357	-				+0.9
1,117,357	-				-0.3
1,117,357	-				-0.7
1,117,357	-				+0.0
1,117,428	+				+1.6
1,117,428	+				-1.1
1,117,429	-				-0.1
1,117,429	-				+0.2
1,117,462	+				-0.5
1,117,463	-				-0.7
1,117,463	-				-0.4
1,117,463	-				+0.4
1,117,503	-				-0.5
1,117,622	+		GFF2232	0.21	-0.4
1,117,712	+		GFF2232	0.30	+0.2
1,117,724	+		GFF2232	0.31	+1.0
1,117,808	-		GFF2232	0.40	-0.1
1,117,835	-		GFF2232	0.43	+0.0
1,117,835	-		GFF2232	0.43	-0.0
1,117,835	-		GFF2232	0.43	+0.9
1,117,835	-		GFF2232	0.43	-0.4
1,117,838	+		GFF2232	0.43	+0.0
1,117,838	+		GFF2232	0.43	-0.7
1,117,839	-		GFF2232	0.43	+0.1
1,117,839	-		GFF2232	0.43	+0.0
1,117,839	-		GFF2232	0.43	-0.3
1,117,839	-		GFF2232	0.43	-0.9
1,117,854	-		GFF2232	0.45	+0.0
1,117,899	+		GFF2232	0.49	-0.5
1,117,900	-		GFF2232	0.49	-0.1
1,117,903	+		GFF2232	0.50	-1.0
1,117,903	+		GFF2232	0.50	-0.1
1,117,949	+		GFF2232	0.55	-0.8
1,118,004	-		GFF2232	0.60	-0.1
1,118,004	-		GFF2232	0.60	+0.6
1,118,008	+		GFF2232	0.61	-0.3
1,118,009	-		GFF2232	0.61	+0.8
1,118,023	+		GFF2232	0.62	-0.2
1,118,024	-		GFF2232	0.62	+0.0
1,118,132	+		GFF2232	0.73	+0.0
1,118,133	-		GFF2232	0.74	+0.6
1,118,147	+		GFF2232	0.75	-1.4
1,118,160	-		GFF2232	0.76	+0.0
1,118,253	-		GFF2232	0.86	-2.3
1,118,298	-				+0.6
1,118,368	-				+0.7
1,118,386	-				-1.6
1,118,401	+				-0.2
1,118,453	+				+0.2
1,118,454	-				-0.7
1,118,469	+				-0.3
1,118,509	+				-0.1
1,118,509	+				+1.6
1,118,509	+				+0.9
1,118,543	+				+0.5
1,118,543	+				-0.0
1,118,544	-				+0.4
1,118,544	-				-0.3
1,118,544	-				+1.3
1,118,570	+				-0.3
1,118,570	+				-0.7
1,118,570	+				+0.3
1,118,570	+				-0.2
1,118,571	-				-0.2
1,118,571	-				-0.1
1,118,635	-				-0.0
1,118,676	+				-1.1
1,118,679	+				-0.3
1,118,679	+				-0.0
1,118,679	+				+0.2
1,118,680	-				-0.1
1,118,680	-				-0.3
1,118,680	-				+0.1
1,118,680	-				-0.2
1,118,680	-				-0.4
1,118,692	-				+0.6
1,118,702	+				-0.4
1,118,752	+				-0.1
1,118,752	+				-0.3
1,118,752	+				+0.5
1,118,753	-				-0.1
1,118,753	-				+0.1
1,118,865	+				+0.6
1,118,865	+				-0.3
1,118,865	+				+0.9
1,118,865	+				+0.0
1,118,865	+				-1.1
1,118,866	-				-0.9
1,119,032	+				+0.3
1,119,033	-				+0.0
1,119,125	+				-0.8
1,119,245	+				+0.4
1,119,245	+				+0.3
1,119,246	-				-1.2
1,119,246	-				+1.6
1,119,246	-				+0.9
1,119,269	+				+0.3
1,119,291	+				+0.2
1,119,291	+				-0.5
1,119,291	+				-0.2
1,119,292	-				+0.6
1,119,292	-				-0.1
1,119,292	-				+0.0
1,119,297	+				+0.0
1,119,298	-				+0.0
1,119,311	-				+0.7
1,119,314	+				-0.5
1,119,314	+				+0.6
1,119,314	+				+0.0
1,119,315	-				-0.6
1,119,341	+				-0.3