Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2229

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,112,804	-		GFF2227	0.61	+0.8
1,112,836	+		GFF2227	0.66	-0.7
1,112,836	+		GFF2227	0.66	+0.1
1,112,878	+		GFF2227	0.72	+0.0
1,112,878	+		GFF2227	0.72	+0.0
1,112,999	-		GFF2227	0.88	+0.0
1,113,005	-		GFF2227	0.89	-0.4
1,113,141	-				+0.6
1,113,141	-				-0.9
1,113,141	-				+1.6
1,113,449	+		GFF2228	0.55	+0.0
1,113,449	+		GFF2228	0.55	+0.0
1,113,973	+		GFF2229	0.12	+0.6
1,113,973	+		GFF2229	0.12	+0.4
1,113,974	-		GFF2229	0.12	-0.2
1,113,974	-		GFF2229	0.12	-0.7
1,114,234	+		GFF2229	0.26	-0.3
1,114,235	-		GFF2229	0.26	+0.2
1,114,235	-		GFF2229	0.26	-0.8
1,114,235	-		GFF2229	0.26	-0.7
1,114,352	-		GFF2229	0.32	+0.8
1,114,352	-		GFF2229	0.32	+0.3
1,114,426	+		GFF2229	0.36	+0.2
1,114,427	-		GFF2229	0.36	+0.0
1,114,427	-		GFF2229	0.36	+1.0
1,114,495	+		GFF2229	0.40	+0.4
1,114,496	-		GFF2229	0.40	+0.5
1,114,549	+		GFF2229	0.43	+0.5
1,114,549	+		GFF2229	0.43	-0.6
1,114,549	+		GFF2229	0.43	-0.1
1,114,549	+		GFF2229	0.43	-0.1
1,114,550	-		GFF2229	0.43	+0.4
1,114,550	-		GFF2229	0.43	+0.1
1,114,555	+		GFF2229	0.43	+0.8
1,114,556	-		GFF2229	0.43	+0.4
1,114,675	+		GFF2229	0.49	-2.0
1,114,675	+		GFF2229	0.49	+0.3
1,114,690	+		GFF2229	0.50	+0.4
1,114,691	-		GFF2229	0.50	+0.7
1,114,691	-		GFF2229	0.50	+0.3
1,114,691	-		GFF2229	0.50	+0.1
1,114,691	-		GFF2229	0.50	+0.3
1,114,691	-		GFF2229	0.50	+1.6
1,114,691	-		GFF2229	0.50	+0.0
1,114,691	-		GFF2229	0.50	+0.6
1,114,699	+		GFF2229	0.51	-0.1
1,114,699	+		GFF2229	0.51	-0.3
1,114,735	+		GFF2229	0.53	+0.5
1,114,756	+		GFF2229	0.54	+0.2
1,114,756	+		GFF2229	0.54	+0.5
1,114,756	+		GFF2229	0.54	+0.6
1,114,756	+		GFF2229	0.54	+0.0
1,114,756	+		GFF2229	0.54	-0.9
1,114,756	+		GFF2229	0.54	+0.4
1,114,789	+		GFF2229	0.56	-1.2
1,114,790	-		GFF2229	0.56	+0.3
1,114,790	-		GFF2229	0.56	-0.1
1,114,790	-		GFF2229	0.56	+0.5
1,114,999	+		GFF2229	0.67	+0.4
1,115,000	-		GFF2229	0.67	-0.3
1,115,041	+		GFF2229	0.69	+0.2
1,115,042	+		GFF2229	0.69	+0.9
1,115,042	-		GFF2229	0.69	+2.6
1,115,131	+		GFF2229	0.74	-0.2
1,115,248	+		GFF2229	0.80	+0.4
1,115,248	+		GFF2229	0.80	-0.6
1,115,248	+		GFF2229	0.80	+0.1
1,115,249	-		GFF2229	0.80	-0.6
1,115,498	-				-0.5
1,115,605	+				+0.4
1,115,606	-				-0.0
1,115,815	-		GFF2230	0.15	+0.9
1,115,925	+		GFF2230	0.26	+0.2
1,115,925	+		GFF2230	0.26	-0.1
1,115,926	-		GFF2230	0.26	-0.0
1,115,955	+		GFF2230	0.28	+0.2
1,115,955	+		GFF2230	0.28	-0.0
1,115,956	-		GFF2230	0.28	-0.5
1,115,956	-		GFF2230	0.28	+0.4
1,115,964	+		GFF2230	0.29	-0.3
1,115,964	+		GFF2230	0.29	+0.5
1,115,965	-		GFF2230	0.29	-0.4
1,116,060	+		GFF2230	0.38	-1.3
1,116,061	-		GFF2230	0.38	-1.0
1,116,061	-		GFF2230	0.38	+0.0
1,116,061	-		GFF2230	0.38	+0.4
1,116,061	-		GFF2230	0.38	+0.2
1,116,120	+		GFF2230	0.44	+0.1
1,116,120	+		GFF2230	0.44	+0.6
1,116,120	+		GFF2230	0.44	-0.2
1,116,120	+		GFF2230	0.44	-0.0
1,116,120	+		GFF2230	0.44	-0.5
1,116,121	-		GFF2230	0.44	+0.5
1,116,121	-		GFF2230	0.44	+0.3
1,116,121	-		GFF2230	0.44	-0.0
1,116,121	-		GFF2230	0.44	+0.3
1,116,121	-		GFF2230	0.44	-0.3
1,116,393	+		GFF2230	0.69	+0.3
1,116,393	+		GFF2230	0.69	-0.1
1,116,393	+		GFF2230	0.69	+0.3
1,116,394	-		GFF2230	0.69	+0.6
1,116,394	-		GFF2230	0.69	-0.3
1,116,394	-		GFF2230	0.69	+1.4
1,116,394	-		GFF2230	0.69	+0.9
1,116,394	-		GFF2230	0.69	+0.2
1,116,394	-		GFF2230	0.69	-0.3
1,116,394	-		GFF2230	0.69	+0.1
1,116,405	+		GFF2230	0.70	+0.5
1,116,405	+		GFF2230	0.70	+0.1
1,116,405	+		GFF2230	0.70	+0.0
1,116,405	+		GFF2230	0.70	+0.1
1,116,405	+		GFF2230	0.70	-0.2
1,116,406	-		GFF2230	0.70	+0.6
1,116,406	-		GFF2230	0.70	-0.3
1,116,406	-		GFF2230	0.70	-0.0
1,116,406	-		GFF2230	0.70	-0.5
1,116,406	-		GFF2230	0.70	+0.3
1,116,406	-		GFF2230	0.70	-0.1
1,116,406	-		GFF2230	0.70	+0.0
1,116,406	-		GFF2230	0.70	-0.3
1,116,475	-		GFF2230	0.76	-1.7
1,116,475	-		GFF2230	0.76	+0.3