Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2169

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,060,509	-		GFF2168	0.24	-0.5
1,060,724	+		GFF2168	0.47	-0.4
1,060,724	+		GFF2168	0.47	+0.0
1,060,725	-		GFF2168	0.47	-0.8
1,060,725	-		GFF2168	0.47	-0.1
1,061,305	+				+0.2
1,061,305	+				-0.2
1,061,305	+				-0.2
1,061,306	-				+0.0
1,061,381	+				-0.1
1,061,381	+				+0.5
1,061,382	-				+0.9
1,061,408	+				+0.3
1,061,409	-				+0.2
1,061,582	+		GFF2169	0.28	+0.7
1,061,793	-		GFF2169	0.53	+0.3
1,062,017	+		GFF2169	0.80	+0.4
1,062,485	-		GFF2170	0.14	+1.1
1,062,518	-		GFF2170	0.16	-0.1
1,062,518	-		GFF2170	0.16	+0.0
1,062,518	-		GFF2170	0.16	+1.2
1,062,916	+		GFF2170	0.35	+0.0
1,062,917	-		GFF2170	0.35	-0.2
1,063,075	-		GFF2170	0.42	-0.8