Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2043

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2040 and GFF2041 overlap by 4 nucleotidesGFF2041 and GFF2042 are separated by 172 nucleotidesGFF2042 and GFF2043 overlap by 28 nucleotidesGFF2043 and GFF2044 overlap by 1 nucleotides GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212 GFF2040 GFF2041 - hypothetical protein, at 922,209 to 922,700 GFF2041 GFF2042 - hypothetical protein, at 922,873 to 922,992 GFF2042 GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266 GFF2043 GFF2044 - Agmatinase (EC 3.5.3.11), at 924,266 to 925,198 GFF2044 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 922.084 kb on + strandat 922.085 kb on - strandat 922.351 kb on - strand, within GFF2041at 922.537 kb on - strand, within GFF2041at 922.698 kb on + strandat 922.698 kb on + strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.164 kb on + strand, within GFF2043at 923.165 kb on - strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.329 kb on + strand, within GFF2043at 923.329 kb on + strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.380 kb on + strand, within GFF2043at 923.381 kb on - strand, within GFF2043at 923.381 kb on - strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.527 kb on + strand, within GFF2043at 923.693 kb on - strand, within GFF2043at 923.743 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.869 kb on + strand, within GFF2043at 923.870 kb on - strand, within GFF2043at 923.870 kb on - strand, within GFF2043at 923.870 kb on - strand, within GFF2043at 923.875 kb on + strand, within GFF2043at 923.875 kb on + strand, within GFF2043at 923.875 kb on + strand, within GFF2043at 924.220 kb on + strandat 924.220 kb on + strandat 924.220 kb on + strandat 924.220 kb on + strandat 924.221 kb on - strandat 924.306 kb on + strandat 924.307 kb on - strandat 924.357 kb on + strandat 924.357 kb on + strandat 924.358 kb on - strandat 924.517 kb on - strand, within GFF2044at 924.517 kb on - strand, within GFF2044at 924.633 kb on + strand, within GFF2044at 924.634 kb on - strand, within GFF2044at 924.721 kb on - strand, within GFF2044at 924.721 kb on - strand, within GFF2044at 924.721 kb on - strand, within GFF2044at 924.721 kb on - strand, within GFF2044at 924.769 kb on + strand, within GFF2044at 924.770 kb on - strand, within GFF2044at 925.176 kb on + strandat 925.233 kb on + strandat 925.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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922,084 + -2.1
922,085 - -1.0
922,351 - GFF2041 0.29 -0.3
922,537 - GFF2041 0.67 +0.7
922,698 + -0.2
922,698 + -0.8
922,699 - +0.0
922,699 - -0.5
922,699 - -0.7
922,966 + +1.3
922,966 + -0.1
922,966 + -0.9
922,966 + -0.2
923,065 + -6.2
923,065 + -4.2
923,065 + -4.1
923,066 - -1.2
923,066 - -4.4
923,066 - -4.6
923,066 - -3.1
923,066 - -3.0
923,164 + GFF2043 0.15 -4.0
923,165 - GFF2043 0.15 -1.8
923,167 + GFF2043 0.16 -1.5
923,167 + GFF2043 0.16 -0.9
923,167 + GFF2043 0.16 -0.9
923,167 + GFF2043 0.16 -5.4
923,167 + GFF2043 0.16 -2.4
923,167 + GFF2043 0.16 -0.7
923,168 - GFF2043 0.16 -2.8
923,168 - GFF2043 0.16 -4.3
923,168 - GFF2043 0.16 -3.9
923,168 - GFF2043 0.16 -7.3
923,329 + GFF2043 0.28 -4.2
923,329 + GFF2043 0.28 -7.1
923,330 - GFF2043 0.28 -4.3
923,330 - GFF2043 0.28 -2.8
923,330 - GFF2043 0.28 -2.2
923,380 + GFF2043 0.32 -5.4
923,381 - GFF2043 0.32 -2.5
923,381 - GFF2043 0.32 -0.9
923,473 + GFF2043 0.39 -5.2
923,473 + GFF2043 0.39 -2.3
923,473 + GFF2043 0.39 -2.4
923,473 + GFF2043 0.39 -3.5
923,473 + GFF2043 0.39 -1.6
923,473 + GFF2043 0.39 -3.2
923,473 + GFF2043 0.39 -2.3
923,474 - GFF2043 0.39 -0.9
923,474 - GFF2043 0.39 -2.3
923,474 - GFF2043 0.39 -1.4
923,474 - GFF2043 0.39 -4.2
923,474 - GFF2043 0.39 -2.6
923,474 - GFF2043 0.39 -5.2
923,474 - GFF2043 0.39 -2.4
923,474 - GFF2043 0.39 -3.8
923,474 - GFF2043 0.39 -2.5
923,527 + GFF2043 0.43 -4.5
923,693 - GFF2043 0.56 -1.8
923,743 + GFF2043 0.60 -2.4
923,869 + GFF2043 0.69 -5.4
923,869 + GFF2043 0.69 -2.4
923,869 + GFF2043 0.69 -3.1
923,869 + GFF2043 0.69 -3.5
923,869 + GFF2043 0.69 -2.2
923,869 + GFF2043 0.69 -2.2
923,870 - GFF2043 0.70 -5.9
923,870 - GFF2043 0.70 -1.9
923,870 - GFF2043 0.70 -3.5
923,875 + GFF2043 0.70 -3.5
923,875 + GFF2043 0.70 -4.1
923,875 + GFF2043 0.70 -3.7
924,220 + -5.0
924,220 + -4.6
924,220 + -6.5
924,220 + -3.0
924,221 - -5.0
924,306 + -0.4
924,307 - -1.8
924,357 + -0.4
924,357 + +0.0
924,358 - +0.0
924,517 - GFF2044 0.27 -0.1
924,517 - GFF2044 0.27 -2.4
924,633 + GFF2044 0.39 -3.9
924,634 - GFF2044 0.39 -3.1
924,721 - GFF2044 0.49 -2.9
924,721 - GFF2044 0.49 -0.7
924,721 - GFF2044 0.49 +0.0
924,721 - GFF2044 0.49 -2.0
924,769 + GFF2044 0.54 +0.5
924,770 - GFF2044 0.54 -1.0
925,176 + -1.6
925,233 + +0.0
925,233 + -0.0

Or see this region's nucleotide sequence