Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2021

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2020 and GFF2021 are separated by 477 nucleotidesGFF2021 and GFF2022 overlap by 4 nucleotides GFF2020 - hypothetical protein, at 895,526 to 896,221 GFF2020 GFF2021 - FIG00977539: hypothetical protein, at 896,699 to 898,087 GFF2021 GFF2022 - membrane protein, putative, at 898,084 to 900,654 GFF2022 Position (kb) 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.743 kb on + strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.744 kb on - strand, within GFF2020at 895.768 kb on - strand, within GFF2020at 895.828 kb on - strand, within GFF2020at 896.499 kb on - strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.739 kb on + strandat 896.740 kb on - strandat 896.751 kb on - strandat 896.835 kb on + strandat 896.836 kb on - strandat 896.963 kb on + strand, within GFF2021at 896.963 kb on + strand, within GFF2021at 896.963 kb on + strand, within GFF2021at 896.964 kb on - strand, within GFF2021at 896.964 kb on - strand, within GFF2021at 897.147 kb on + strand, within GFF2021at 897.148 kb on - strand, within GFF2021at 897.148 kb on - strand, within GFF2021at 897.590 kb on + strand, within GFF2021at 897.667 kb on - strand, within GFF2021at 897.714 kb on + strand, within GFF2021at 897.714 kb on + strand, within GFF2021at 897.714 kb on + strand, within GFF2021at 897.715 kb on - strand, within GFF2021at 897.732 kb on + strand, within GFF2021at 897.951 kb on + strandat 897.951 kb on + strandat 897.952 kb on - strandat 897.952 kb on - strandat 897.952 kb on - strandat 897.952 kb on - strandat 898.178 kb on + strandat 898.238 kb on + strandat 898.238 kb on + strandat 898.238 kb on + strandat 898.238 kb on + strandat 898.239 kb on - strandat 898.349 kb on + strand, within GFF2022at 898.350 kb on - strand, within GFF2022at 898.350 kb on - strand, within GFF2022at 898.367 kb on + strand, within GFF2022at 898.368 kb on - strand, within GFF2022at 898.368 kb on - strand, within GFF2022at 898.368 kb on - strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.535 kb on + strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.536 kb on - strand, within GFF2022at 898.796 kb on + strand, within GFF2022at 898.796 kb on + strand, within GFF2022at 898.796 kb on + strand, within GFF2022at 898.797 kb on - strand, within GFF2022at 898.826 kb on + strand, within GFF2022at 898.826 kb on + strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.827 kb on - strand, within GFF2022at 898.916 kb on + strand, within GFF2022at 898.916 kb on + strand, within GFF2022at 898.916 kb on + strand, within GFF2022at 898.917 kb on - strand, within GFF2022at 898.917 kb on - strand, within GFF2022at 898.917 kb on - strand, within GFF2022

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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895,743 + GFF2020 0.31 -0.6
895,743 + GFF2020 0.31 +0.4
895,743 + GFF2020 0.31 +0.3
895,744 - GFF2020 0.31 +0.0
895,744 - GFF2020 0.31 +1.0
895,744 - GFF2020 0.31 +0.3
895,744 - GFF2020 0.31 -2.1
895,744 - GFF2020 0.31 -0.2
895,744 - GFF2020 0.31 +0.1
895,744 - GFF2020 0.31 +0.6
895,744 - GFF2020 0.31 -1.1
895,744 - GFF2020 0.31 -1.0
895,744 - GFF2020 0.31 -0.2
895,744 - GFF2020 0.31 -0.4
895,744 - GFF2020 0.31 +1.3
895,744 - GFF2020 0.31 +0.0
895,744 - GFF2020 0.31 -0.1
895,744 - GFF2020 0.31 +0.4
895,744 - GFF2020 0.31 +0.0
895,744 - GFF2020 0.31 +0.6
895,768 - GFF2020 0.35 -0.1
895,828 - GFF2020 0.43 -0.1
896,499 - +1.0
896,739 + -0.2
896,739 + +0.1
896,739 + -0.1
896,739 + +0.1
896,740 - -0.1
896,751 - +0.6
896,835 + -0.1
896,836 - -0.4
896,963 + GFF2021 0.19 +0.1
896,963 + GFF2021 0.19 +1.0
896,963 + GFF2021 0.19 +1.5
896,964 - GFF2021 0.19 +0.3
896,964 - GFF2021 0.19 +1.4
897,147 + GFF2021 0.32 +0.7
897,148 - GFF2021 0.32 +0.6
897,148 - GFF2021 0.32 +0.2
897,590 + GFF2021 0.64 +0.3
897,667 - GFF2021 0.70 +0.7
897,714 + GFF2021 0.73 -0.3
897,714 + GFF2021 0.73 +0.8
897,714 + GFF2021 0.73 +0.5
897,715 - GFF2021 0.73 -0.9
897,732 + GFF2021 0.74 +0.4
897,951 + -0.3
897,951 + -0.3
897,952 - +0.4
897,952 - -0.3
897,952 - +0.2
897,952 - -0.6
898,178 + -0.1
898,238 + -0.2
898,238 + -0.2
898,238 + +0.0
898,238 + -1.0
898,239 - +0.0
898,349 + GFF2022 0.10 -0.4
898,350 - GFF2022 0.10 +0.7
898,350 - GFF2022 0.10 -0.4
898,367 + GFF2022 0.11 +0.7
898,368 - GFF2022 0.11 +0.8
898,368 - GFF2022 0.11 +0.6
898,368 - GFF2022 0.11 +0.1
898,535 + GFF2022 0.18 -0.1
898,535 + GFF2022 0.18 +0.1
898,535 + GFF2022 0.18 +0.1
898,535 + GFF2022 0.18 +0.4
898,535 + GFF2022 0.18 +0.6
898,535 + GFF2022 0.18 +0.9
898,535 + GFF2022 0.18 -0.7
898,535 + GFF2022 0.18 -0.1
898,535 + GFF2022 0.18 +1.2
898,535 + GFF2022 0.18 +0.1
898,536 - GFF2022 0.18 -0.4
898,536 - GFF2022 0.18 -0.3
898,536 - GFF2022 0.18 -0.4
898,536 - GFF2022 0.18 +1.1
898,536 - GFF2022 0.18 -0.7
898,536 - GFF2022 0.18 +0.4
898,536 - GFF2022 0.18 -1.3
898,536 - GFF2022 0.18 -0.0
898,536 - GFF2022 0.18 +0.0
898,796 + GFF2022 0.28 -0.3
898,796 + GFF2022 0.28 +0.1
898,796 + GFF2022 0.28 +0.6
898,797 - GFF2022 0.28 -0.2
898,826 + GFF2022 0.29 +0.3
898,826 + GFF2022 0.29 +0.6
898,827 - GFF2022 0.29 -0.2
898,827 - GFF2022 0.29 -0.6
898,827 - GFF2022 0.29 +0.3
898,827 - GFF2022 0.29 +0.2
898,827 - GFF2022 0.29 +0.5
898,827 - GFF2022 0.29 +1.3
898,916 + GFF2022 0.32 +0.3
898,916 + GFF2022 0.32 +0.1
898,916 + GFF2022 0.32 +0.1
898,917 - GFF2022 0.32 +0.7
898,917 - GFF2022 0.32 +0.9
898,917 - GFF2022 0.32 +0.0

Or see this region's nucleotide sequence