Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF184 and GFF185 overlap by 4 nucleotides GFF185 and GFF186 are separated by 40 nucleotides GFF186 and GFF187 overlap by 4 nucleotides GFF187 and GFF188 are separated by 13 nucleotides
GFF184 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 196,978 to 197,931
GFF184
GFF185 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 197,928 to 198,857
GFF185
GFF186 - hypothetical protein, at 198,898 to 199,665
GFF186
GFF187 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 199,662 to 200,624
GFF187
GFF188 - probable extracellular solute-binding protein, at 200,638 to 201,387
GFF188
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 198.148 kb on - strand, within GFF185 at 198.529 kb on - strand, within GFF185 at 199.180 kb on + strand, within GFF186 at 199.180 kb on + strand, within GFF186 at 199.225 kb on + strand, within GFF186 at 199.225 kb on + strand, within GFF186 at 199.225 kb on + strand, within GFF186 at 199.225 kb on + strand, within GFF186 at 199.226 kb on - strand, within GFF186 at 199.246 kb on + strand, within GFF186 at 199.426 kb on + strand, within GFF186 at 199.687 kb on - strand at 200.149 kb on - strand, within GFF187 at 200.149 kb on - strand, within GFF187
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 198,148 - GFF185 0.24 +0.2 198,529 - GFF185 0.65 +0.0 199,180 + GFF186 0.37 -2.3 199,180 + GFF186 0.37 -0.5 199,225 + GFF186 0.43 +0.7 199,225 + GFF186 0.43 -0.1 199,225 + GFF186 0.43 -0.2 199,225 + GFF186 0.43 +0.1 199,226 - GFF186 0.43 -0.4 199,246 + GFF186 0.45 -0.4 199,426 + GFF186 0.69 +0.2 199,687 - -0.1 200,149 - GFF187 0.51 -0.1 200,149 - GFF187 0.51 -0.3
Or see this region's nucleotide sequence