Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1648 and GFF1649 are separated by 2 nucleotides GFF1649 and GFF1650 overlap by 4 nucleotides GFF1650 and GFF1651 overlap by 4 nucleotides GFF1651 and GFF1652 are separated by 7 nucleotides GFF1652 and GFF1653 are separated by 20 nucleotides
GFF1648 - (De)hydratase mit MaoC domain, at 504,200 to 504,601
GFF1648
GFF1649 - Acyl dehydratase, MaoC-like domain (EC 2.3.1.8), at 504,604 to 505,050
GFF1649
GFF1650 - blr3308; hypothetical protein, at 505,047 to 505,352
GFF1650
GFF1651 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 505,349 to 505,849
GFF1651
GFF1652 - similar to protocatechuate 4,5-dioxygenase beta chain, at 505,857 to 506,702
GFF1652
GFF1653 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 506,723 to 507,073
GFF1653
Position (kb) 505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 504.607 kb on + strand at 504.607 kb on + strand at 504.607 kb on + strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.608 kb on - strand at 504.691 kb on + strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.692 kb on - strand, within GFF1649 at 504.740 kb on - strand, within GFF1649 at 505.246 kb on - strand, within GFF1650 at 505.451 kb on - strand, within GFF1651 at 505.619 kb on + strand, within GFF1651 at 505.620 kb on - strand, within GFF1651 at 505.620 kb on - strand, within GFF1651 at 505.703 kb on + strand, within GFF1651 at 505.912 kb on + strand at 505.912 kb on + strand at 505.913 kb on - strand at 506.215 kb on + strand, within GFF1652 at 506.467 kb on + strand, within GFF1652 at 506.537 kb on - strand, within GFF1652 at 506.838 kb on + strand, within GFF1653 at 506.838 kb on + strand, within GFF1653 at 506.839 kb on - strand, within GFF1653 at 506.841 kb on + strand, within GFF1653 at 506.842 kb on - strand, within GFF1653
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 504,607 + -0.3 504,607 + -1.9 504,607 + -0.1 504,608 - +0.2 504,608 - -1.0 504,608 - -0.1 504,608 - -0.8 504,691 + GFF1649 0.19 +0.5 504,692 - GFF1649 0.20 -0.1 504,692 - GFF1649 0.20 -0.9 504,740 - GFF1649 0.30 -0.0 505,246 - GFF1650 0.65 +0.2 505,451 - GFF1651 0.20 -1.0 505,619 + GFF1651 0.54 -0.2 505,620 - GFF1651 0.54 -0.6 505,620 - GFF1651 0.54 -0.3 505,703 + GFF1651 0.71 -1.4 505,912 + +0.4 505,912 + +0.0 505,913 - -0.1 506,215 + GFF1652 0.42 +0.1 506,467 + GFF1652 0.72 +0.2 506,537 - GFF1652 0.80 +0.3 506,838 + GFF1653 0.33 +0.8 506,838 + GFF1653 0.33 -0.2 506,839 - GFF1653 0.33 +0.3 506,841 + GFF1653 0.34 +0.1 506,842 - GFF1653 0.34 +0.4
Or see this region's nucleotide sequence