Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1635

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
490,399	+		GFF1634	0.68	+0.1
490,399	+		GFF1634	0.68	+0.3
490,418	-		GFF1634	0.69	+0.3
490,418	-		GFF1634	0.69	-0.7
490,528	+		GFF1634	0.75	-0.7
490,529	-		GFF1634	0.75	-0.2
490,529	-		GFF1634	0.75	+0.5
490,909	+				+0.2
491,109	+				-0.2
491,109	+				+1.1
491,109	+				-0.3
491,110	-				-0.1
491,301	+		GFF1635	0.29	+0.4
491,301	+		GFF1635	0.29	-0.1
491,302	-		GFF1635	0.29	-0.4
491,400	+		GFF1635	0.43	+1.2
491,401	-		GFF1635	0.43	+1.3
491,778	+				-0.0
491,778	+				-0.4
492,010	+		GFF1636	0.20	+0.1
492,125	-		GFF1636	0.31	-0.1
492,125	-		GFF1636	0.31	+0.2