Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1618 and GFF1619 are separated by 108 nucleotides GFF1619 and GFF1620 are separated by 7 nucleotides GFF1620 and GFF1621 are separated by 56 nucleotides
GFF1618 - Sensory box histidine kinase/response regulator, at 471,894 to 473,879
GFF1618
GFF1619 - Glutathione S-transferase (EC 2.5.1.18), at 473,988 to 474,677
GFF1619
GFF1620 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 474,685 to 475,191
GFF1620
GFF1621 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 475,248 to 476,510
GFF1621
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1 at 472.994 kb on + strand, within GFF1618 at 472.994 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.061 kb on + strand, within GFF1618 at 473.062 kb on + strand, within GFF1618 at 473.062 kb on - strand, within GFF1618 at 473.062 kb on - strand, within GFF1618 at 473.062 kb on - strand, within GFF1618 at 473.062 kb on - strand, within GFF1618 at 473.761 kb on - strand at 473.830 kb on - strand at 473.862 kb on + strand at 473.862 kb on + strand at 473.863 kb on - strand at 473.863 kb on - strand at 473.863 kb on - strand at 473.956 kb on + strand at 473.956 kb on + strand at 473.956 kb on + strand at 473.972 kb on - strand at 474.003 kb on + strand at 474.004 kb on - strand at 474.004 kb on - strand at 474.021 kb on + strand at 474.021 kb on + strand at 474.021 kb on + strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.022 kb on - strand at 474.219 kb on + strand, within GFF1619 at 474.219 kb on + strand, within GFF1619 at 474.219 kb on + strand, within GFF1619 at 474.504 kb on + strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.538 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.743 kb on - strand, within GFF1620 at 474.863 kb on - strand, within GFF1620 at 474.949 kb on + strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 475.069 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.103 kb on - strand, within GFF1620 at 475.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 472,994 + GFF1618 0.55 +0.1 472,994 + GFF1618 0.55 +0.4 473,061 + GFF1618 0.59 -0.0 473,061 + GFF1618 0.59 +0.6 473,061 + GFF1618 0.59 -0.4 473,061 + GFF1618 0.59 -0.0 473,061 + GFF1618 0.59 +0.5 473,061 + GFF1618 0.59 -1.2 473,061 + GFF1618 0.59 -0.2 473,061 + GFF1618 0.59 -0.7 473,061 + GFF1618 0.59 -0.3 473,061 + GFF1618 0.59 +0.8 473,062 + GFF1618 0.59 +0.1 473,062 - GFF1618 0.59 +0.4 473,062 - GFF1618 0.59 -0.6 473,062 - GFF1618 0.59 -0.3 473,062 - GFF1618 0.59 +0.5 473,761 - -1.0 473,830 - +0.7 473,862 + -1.0 473,862 + +0.6 473,863 - +0.6 473,863 - -0.2 473,863 - -0.1 473,956 + -0.0 473,956 + -0.8 473,956 + +0.9 473,972 - +0.1 474,003 + +0.5 474,004 - +0.1 474,004 - +0.4 474,021 + +0.3 474,021 + +0.6 474,021 + +0.1 474,022 - +0.2 474,022 - +1.0 474,022 - +0.4 474,022 - +0.7 474,219 + GFF1619 0.33 +1.6 474,219 + GFF1619 0.33 -0.2 474,219 + GFF1619 0.33 +0.1 474,504 + GFF1619 0.75 +0.9 474,505 - GFF1619 0.75 -2.4 474,505 - GFF1619 0.75 +0.5 474,537 + GFF1619 0.80 +0.1 474,537 + GFF1619 0.80 -0.2 474,537 + GFF1619 0.80 -0.1 474,538 - GFF1619 0.80 +0.9 474,571 - GFF1619 0.84 +1.3 474,571 - GFF1619 0.84 -0.1 474,742 + GFF1620 0.11 +1.0 474,742 + GFF1620 0.11 -0.1 474,742 + GFF1620 0.11 -0.7 474,742 + GFF1620 0.11 +0.1 474,742 + GFF1620 0.11 -1.0 474,742 + GFF1620 0.11 +0.6 474,742 + GFF1620 0.11 +0.0 474,743 - GFF1620 0.11 +1.2 474,863 - GFF1620 0.35 +0.9 474,949 + GFF1620 0.52 -0.7 474,950 - GFF1620 0.52 +1.6 474,950 - GFF1620 0.52 -0.1 475,069 + GFF1620 0.76 -0.4 475,102 + GFF1620 0.82 +0.4 475,102 + GFF1620 0.82 -0.1 475,103 - GFF1620 0.82 -0.3 475,220 + -1.0
Or see this region's nucleotide sequence