Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF126

Experiment: Ying_Others16 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF125 and GFF126 are separated by 101 nucleotidesGFF126 and GFF127 are separated by 13 nucleotides GFF125 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 138,272 to 139,966 GFF125 GFF126 - Hydratase/decarboxylase, at 140,068 to 140,868 GFF126 GFF127 - transcriptional regulator, MerR family, at 140,882 to 141,814 GFF127 Position (kb) 140 141Strain fitness (log2 ratio) -1 0 1 2at 139.242 kb on + strand, within GFF125at 139.242 kb on + strand, within GFF125at 139.242 kb on + strand, within GFF125at 139.243 kb on - strand, within GFF125at 139.243 kb on - strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.285 kb on + strand, within GFF125at 139.286 kb on - strand, within GFF125at 139.286 kb on - strand, within GFF125at 139.286 kb on - strand, within GFF125at 139.286 kb on - strand, within GFF125at 139.286 kb on - strand, within GFF125at 139.434 kb on + strand, within GFF125at 139.434 kb on + strand, within GFF125at 139.435 kb on - strand, within GFF125at 139.435 kb on - strand, within GFF125at 139.521 kb on + strand, within GFF125at 139.522 kb on - strand, within GFF125at 139.554 kb on + strand, within GFF125at 139.554 kb on + strand, within GFF125at 139.555 kb on - strand, within GFF125at 139.555 kb on - strand, within GFF125at 139.807 kb on - strandat 139.807 kb on - strandat 139.807 kb on - strandat 139.807 kb on - strandat 139.923 kb on + strandat 139.984 kb on + strandat 139.984 kb on + strandat 139.985 kb on - strandat 139.985 kb on - strandat 139.985 kb on - strandat 140.003 kb on + strandat 140.003 kb on + strandat 140.004 kb on - strandat 140.004 kb on - strandat 140.027 kb on - strandat 140.988 kb on + strand, within GFF127at 140.988 kb on + strand, within GFF127at 141.057 kb on + strand, within GFF127at 141.057 kb on + strand, within GFF127at 141.057 kb on + strand, within GFF127at 141.057 kb on + strand, within GFF127at 141.058 kb on - strand, within GFF127at 141.058 kb on - strand, within GFF127at 141.058 kb on - strand, within GFF127at 141.058 kb on - strand, within GFF127at 141.303 kb on + strand, within GFF127at 141.304 kb on - strand, within GFF127at 141.304 kb on - strand, within GFF127at 141.304 kb on - strand, within GFF127at 141.676 kb on - strand, within GFF127

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
remove
139,242 + GFF125 0.57 -0.1
139,242 + GFF125 0.57 -0.4
139,242 + GFF125 0.57 -0.1
139,243 - GFF125 0.57 +0.3
139,243 - GFF125 0.57 +0.7
139,285 + GFF125 0.60 -0.1
139,285 + GFF125 0.60 +0.3
139,285 + GFF125 0.60 +0.8
139,285 + GFF125 0.60 +0.2
139,285 + GFF125 0.60 -0.0
139,285 + GFF125 0.60 -0.1
139,285 + GFF125 0.60 -0.2
139,286 - GFF125 0.60 +0.1
139,286 - GFF125 0.60 +0.1
139,286 - GFF125 0.60 -0.1
139,286 - GFF125 0.60 -0.1
139,286 - GFF125 0.60 -0.9
139,434 + GFF125 0.69 +0.2
139,434 + GFF125 0.69 +0.3
139,435 - GFF125 0.69 +0.0
139,435 - GFF125 0.69 -0.4
139,521 + GFF125 0.74 -0.6
139,522 - GFF125 0.74 +0.7
139,554 + GFF125 0.76 +1.5
139,554 + GFF125 0.76 +0.5
139,555 - GFF125 0.76 -0.1
139,555 - GFF125 0.76 +0.2
139,807 - +0.3
139,807 - -1.0
139,807 - -0.2
139,807 - +2.0
139,923 + +0.6
139,984 + +0.2
139,984 + -1.0
139,985 - +0.7
139,985 - +0.1
139,985 - +0.5
140,003 + +0.5
140,003 + -0.0
140,004 - -0.2
140,004 - +0.3
140,027 - -0.7
140,988 + GFF127 0.11 +0.4
140,988 + GFF127 0.11 +0.2
141,057 + GFF127 0.19 -0.4
141,057 + GFF127 0.19 -0.2
141,057 + GFF127 0.19 +0.1
141,057 + GFF127 0.19 -0.0
141,058 - GFF127 0.19 +0.1
141,058 - GFF127 0.19 +0.3
141,058 - GFF127 0.19 -0.2
141,058 - GFF127 0.19 -0.1
141,303 + GFF127 0.45 +0.5
141,304 - GFF127 0.45 -0.2
141,304 - GFF127 0.45 +0.7
141,304 - GFF127 0.45 -0.9
141,676 - GFF127 0.85 -0.3

Or see this region's nucleotide sequence