Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1245 and GFF1246 are separated by 13 nucleotides GFF1246 and GFF1247 overlap by 4 nucleotides GFF1247 and GFF1248 are separated by 17 nucleotides GFF1248 and GFF1249 are separated by 135 nucleotides
GFF1245 - Dihydroneopterin triphosphate pyrophosphohydolase type 2, at 104,851 to 105,306
GFF1245
GFF1246 - hypothetical protein, at 105,320 to 105,607
GFF1246
GFF1247 - Probable transmembrane protein, at 105,604 to 105,990
GFF1247
GFF1248 - Probable transmembrane protein, at 106,008 to 106,328
GFF1248
GFF1249 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 106,464 to 108,263
GFF1249
Position (kb) 106
107 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 105.051 kb on - strand, within GFF1245 at 105.051 kb on - strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.072 kb on - strand, within GFF1245 at 105.072 kb on - strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.081 kb on - strand, within GFF1245 at 105.233 kb on + strand, within GFF1245 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.718 kb on + strand, within GFF1247 at 105.718 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.314 kb on - strand at 106.314 kb on - strand at 106.357 kb on - strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.410 kb on + strand at 106.411 kb on - strand at 106.411 kb on - strand at 106.411 kb on - strand at 106.411 kb on - strand at 106.411 kb on - strand at 106.454 kb on + strand at 106.454 kb on + strand at 106.455 kb on - strand at 106.455 kb on - strand at 106.455 kb on - strand at 106.455 kb on - strand at 106.455 kb on - strand at 106.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 105,051 - GFF1245 0.44 -0.5 105,051 - GFF1245 0.44 -0.2 105,071 + GFF1245 0.48 -0.3 105,071 + GFF1245 0.48 +0.4 105,071 + GFF1245 0.48 -0.5 105,071 + GFF1245 0.48 -0.4 105,072 - GFF1245 0.48 -0.5 105,072 - GFF1245 0.48 -0.5 105,080 + GFF1245 0.50 +0.4 105,080 + GFF1245 0.50 +0.6 105,080 + GFF1245 0.50 -0.7 105,081 - GFF1245 0.50 +2.0 105,233 + GFF1245 0.84 -0.7 105,677 + GFF1247 0.19 -0.5 105,677 + GFF1247 0.19 -0.3 105,677 + GFF1247 0.19 -1.4 105,677 + GFF1247 0.19 -1.1 105,677 + GFF1247 0.19 -0.2 105,677 + GFF1247 0.19 +0.8 105,678 - GFF1247 0.19 +0.6 105,678 - GFF1247 0.19 -0.4 105,678 - GFF1247 0.19 -0.4 105,678 - GFF1247 0.19 +0.0 105,678 - GFF1247 0.19 -1.2 105,678 - GFF1247 0.19 +0.3 105,678 - GFF1247 0.19 +0.3 105,718 + GFF1247 0.29 +0.0 105,718 + GFF1247 0.29 -0.5 105,854 + GFF1247 0.65 -0.7 105,854 + GFF1247 0.65 -0.0 105,854 + GFF1247 0.65 -0.9 105,854 + GFF1247 0.65 -0.1 105,854 + GFF1247 0.65 +0.2 106,090 + GFF1248 0.26 +0.3 106,090 + GFF1248 0.26 +0.8 106,090 + GFF1248 0.26 +0.2 106,090 + GFF1248 0.26 +0.6 106,090 + GFF1248 0.26 -0.1 106,091 - GFF1248 0.26 +0.8 106,091 - GFF1248 0.26 +0.2 106,091 - GFF1248 0.26 -0.2 106,091 - GFF1248 0.26 +0.3 106,314 - -1.0 106,314 - -0.1 106,357 - -2.8 106,410 + -0.7 106,410 + +0.3 106,410 + -0.1 106,410 + +0.1 106,410 + +0.5 106,410 + -0.0 106,410 + +0.2 106,410 + -0.0 106,411 - -0.2 106,411 - -0.3 106,411 - +0.3 106,411 - -0.6 106,411 - +0.6 106,454 + -0.3 106,454 + +0.6 106,455 - -0.3 106,455 - -0.6 106,455 - +0.1 106,455 - -0.1 106,455 - -0.2 106,455 - -0.5
Or see this region's nucleotide sequence