Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1235 and GFF1236 are separated by 50 nucleotides GFF1236 and GFF1237 are separated by 336 nucleotides GFF1237 and GFF1238 are separated by 5 nucleotides GFF1238 and GFF1239 are separated by 72 nucleotides
GFF1235 - Transcriptional regulator, AraC family, at 95,245 to 96,072
GFF1235
GFF1236 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 96,123 to 96,635
GFF1236
GFF1237 - FIG00932538: hypothetical protein, at 96,972 to 97,817
GFF1237
GFF1238 - Integral membrane protein, at 97,823 to 98,704
GFF1238
GFF1239 - FIG00933538: hypothetical protein, at 98,777 to 99,202
GFF1239
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 96.088 kb on + strand at 96.089 kb on - strand at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.367 kb on + strand, within GFF1236 at 96.368 kb on - strand, within GFF1236 at 96.368 kb on - strand, within GFF1236 at 96.927 kb on + strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.962 kb on - strand at 97.262 kb on - strand, within GFF1237 at 97.262 kb on - strand, within GFF1237 at 97.262 kb on - strand, within GFF1237 at 97.546 kb on + strand, within GFF1237 at 97.546 kb on + strand, within GFF1237 at 97.546 kb on + strand, within GFF1237 at 97.547 kb on - strand, within GFF1237 at 97.547 kb on - strand, within GFF1237 at 97.989 kb on + strand, within GFF1238 at 97.989 kb on + strand, within GFF1238 at 97.989 kb on + strand, within GFF1238 at 97.990 kb on - strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.005 kb on - strand, within GFF1238 at 98.005 kb on - strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.134 kb on - strand, within GFF1238 at 98.134 kb on - strand, within GFF1238 at 98.136 kb on + strand, within GFF1238 at 98.193 kb on + strand, within GFF1238 at 98.194 kb on - strand, within GFF1238 at 98.227 kb on - strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.473 kb on - strand, within GFF1238 at 98.475 kb on + strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 96,088 + -0.2 96,089 - -0.1 96,238 + GFF1236 0.22 +0.9 96,238 + GFF1236 0.22 -0.0 96,238 + GFF1236 0.22 +1.0 96,238 + GFF1236 0.22 +0.2 96,238 + GFF1236 0.22 -0.1 96,238 + GFF1236 0.22 +1.0 96,238 + GFF1236 0.22 +0.1 96,239 - GFF1236 0.23 -0.1 96,239 - GFF1236 0.23 +0.3 96,239 - GFF1236 0.23 +0.1 96,367 + GFF1236 0.48 +0.7 96,368 - GFF1236 0.48 +0.2 96,368 - GFF1236 0.48 +0.2 96,927 + -0.3 96,928 - -0.6 96,928 - -0.3 96,928 - -0.1 96,928 - +0.1 96,961 + +0.1 96,961 + -0.3 96,961 + -0.0 96,961 + +0.1 96,962 - -0.6 97,262 - GFF1237 0.34 +0.4 97,262 - GFF1237 0.34 -0.5 97,262 - GFF1237 0.34 +0.5 97,546 + GFF1237 0.68 +0.5 97,546 + GFF1237 0.68 +0.8 97,546 + GFF1237 0.68 +0.4 97,547 - GFF1237 0.68 +1.4 97,547 - GFF1237 0.68 -0.9 97,989 + GFF1238 0.19 -0.4 97,989 + GFF1238 0.19 +0.1 97,989 + GFF1238 0.19 +0.1 97,990 - GFF1238 0.19 -0.4 98,004 + GFF1238 0.21 +0.5 98,004 + GFF1238 0.21 +0.1 98,004 + GFF1238 0.21 +0.6 98,004 + GFF1238 0.21 +0.8 98,005 - GFF1238 0.21 +0.2 98,005 - GFF1238 0.21 -0.3 98,133 + GFF1238 0.35 +0.9 98,133 + GFF1238 0.35 +0.1 98,133 + GFF1238 0.35 +0.2 98,133 + GFF1238 0.35 -1.1 98,134 - GFF1238 0.35 +0.2 98,134 - GFF1238 0.35 +1.1 98,136 + GFF1238 0.35 +0.1 98,193 + GFF1238 0.42 +0.2 98,194 - GFF1238 0.42 +0.6 98,227 - GFF1238 0.46 -2.5 98,472 + GFF1238 0.74 +0.9 98,472 + GFF1238 0.74 +0.3 98,472 + GFF1238 0.74 -0.0 98,472 + GFF1238 0.74 +0.8 98,472 + GFF1238 0.74 -1.0 98,473 - GFF1238 0.74 +0.5 98,475 + GFF1238 0.74 -0.3 98,476 - GFF1238 0.74 +0.2 98,476 - GFF1238 0.74 -0.3 98,476 - GFF1238 0.74 -0.5 98,476 - GFF1238 0.74 +0.5 98,476 - GFF1238 0.74 -0.7
Or see this region's nucleotide sequence