Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1199 and GFF1200 are separated by 2 nucleotides GFF1200 and GFF1201 are separated by 202 nucleotides GFF1201 and GFF1202 are separated by 133 nucleotides
GFF1199 - hypothetical protein, at 59,791 to 60,390
GFF1199
GFF1200 - FIG00431662: hypothetical protein, at 60,393 to 61,025
GFF1200
GFF1201 - Benzoyl-CoA oxygenase component A, at 61,228 to 62,529
GFF1201
GFF1202 - Benzoyl-CoA oxygenase component B, at 62,663 to 64,090
GFF1202
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 60.514 kb on + strand, within GFF1200 at 60.514 kb on + strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 61.010 kb on + strand at 61.010 kb on + strand at 61.010 kb on + strand at 61.010 kb on + strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.025 kb on + strand at 61.025 kb on + strand at 61.041 kb on + strand at 61.041 kb on + strand at 61.042 kb on - strand at 61.042 kb on - strand at 61.042 kb on - strand at 61.232 kb on + strand at 61.233 kb on - strand at 61.364 kb on + strand, within GFF1201 at 61.364 kb on + strand, within GFF1201 at 61.365 kb on - strand, within GFF1201 at 61.365 kb on - strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.437 kb on - strand, within GFF1201 at 61.520 kb on + strand, within GFF1201 at 61.521 kb on - strand, within GFF1201 at 61.698 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.794 kb on - strand, within GFF1201 at 61.868 kb on + strand, within GFF1201 at 61.992 kb on - strand, within GFF1201 at 62.082 kb on - strand, within GFF1201 at 62.082 kb on - strand, within GFF1201 at 62.082 kb on - strand, within GFF1201 at 62.094 kb on - strand, within GFF1201 at 62.094 kb on - strand, within GFF1201 at 62.094 kb on - strand, within GFF1201 at 62.094 kb on - strand, within GFF1201 at 62.094 kb on - strand, within GFF1201 at 62.405 kb on + strand at 62.405 kb on + strand at 62.405 kb on + strand at 62.405 kb on + strand at 62.406 kb on - strand at 62.406 kb on - strand at 62.406 kb on - strand at 62.406 kb on - strand at 62.549 kb on + strand at 62.550 kb on - strand at 62.550 kb on - strand at 62.560 kb on + strand at 62.561 kb on - strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.676 kb on - strand at 62.679 kb on + strand at 62.679 kb on + strand at 62.679 kb on + strand at 63.081 kb on + strand, within GFF1202 at 63.081 kb on + strand, within GFF1202 at 63.081 kb on + strand, within GFF1202 at 63.081 kb on + strand, within GFF1202 at 63.081 kb on + strand, within GFF1202 at 63.082 kb on - strand, within GFF1202 at 63.153 kb on + strand, within GFF1202 at 63.153 kb on + strand, within GFF1202 at 63.154 kb on - strand, within GFF1202 at 63.154 kb on - strand, within GFF1202 at 63.154 kb on - strand, within GFF1202 at 63.154 kb on - strand, within GFF1202 at 63.211 kb on - strand, within GFF1202 at 63.462 kb on + strand, within GFF1202 at 63.462 kb on + strand, within GFF1202 at 63.463 kb on - strand, within GFF1202 at 63.463 kb on - strand, within GFF1202
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 60,514 + GFF1200 0.19 +0.2 60,514 + GFF1200 0.19 +0.5 60,617 - GFF1200 0.35 +0.3 60,617 - GFF1200 0.35 +0.2 60,617 - GFF1200 0.35 +0.2 60,730 + GFF1200 0.53 +0.8 60,730 + GFF1200 0.53 -0.9 60,731 - GFF1200 0.53 -0.9 60,731 - GFF1200 0.53 -1.0 60,731 - GFF1200 0.53 -0.1 61,010 + +0.1 61,010 + -0.1 61,010 + -0.3 61,010 + -0.0 61,011 - -0.6 61,011 - +0.5 61,011 - +0.2 61,011 - +0.1 61,011 - +0.8 61,025 + +0.7 61,025 + +1.0 61,041 + +0.3 61,041 + +0.6 61,042 - +0.6 61,042 - -1.1 61,042 - -0.0 61,232 + -0.3 61,233 - +0.6 61,364 + GFF1201 0.10 -0.3 61,364 + GFF1201 0.10 -0.1 61,365 - GFF1201 0.11 -0.3 61,365 - GFF1201 0.11 -0.6 61,436 + GFF1201 0.16 -0.1 61,436 + GFF1201 0.16 -0.4 61,436 + GFF1201 0.16 +0.3 61,437 - GFF1201 0.16 -0.5 61,520 + GFF1201 0.22 -0.4 61,521 - GFF1201 0.23 +0.9 61,698 + GFF1201 0.36 -0.4 61,751 + GFF1201 0.40 +0.5 61,751 + GFF1201 0.40 +0.5 61,751 + GFF1201 0.40 +0.3 61,751 + GFF1201 0.40 -0.8 61,751 + GFF1201 0.40 -0.0 61,751 + GFF1201 0.40 +0.1 61,751 + GFF1201 0.40 -0.1 61,751 + GFF1201 0.40 -0.1 61,752 - GFF1201 0.40 +0.3 61,752 - GFF1201 0.40 +0.3 61,752 - GFF1201 0.40 -0.5 61,752 - GFF1201 0.40 +0.4 61,752 - GFF1201 0.40 +0.3 61,794 - GFF1201 0.43 +0.1 61,868 + GFF1201 0.49 +0.1 61,992 - GFF1201 0.59 -0.8 62,082 - GFF1201 0.66 +0.2 62,082 - GFF1201 0.66 +1.6 62,082 - GFF1201 0.66 -0.1 62,094 - GFF1201 0.67 +0.4 62,094 - GFF1201 0.67 -0.5 62,094 - GFF1201 0.67 +0.8 62,094 - GFF1201 0.67 -0.7 62,094 - GFF1201 0.67 -0.1 62,405 + -0.0 62,405 + -0.3 62,405 + +0.2 62,405 + -0.2 62,406 - +0.7 62,406 - +0.2 62,406 - -1.5 62,406 - +0.5 62,549 + +0.1 62,550 - -0.2 62,550 - +0.1 62,560 + -1.1 62,561 - +0.5 62,675 + +0.6 62,675 + -0.3 62,675 + -1.4 62,676 - +0.3 62,679 + -0.0 62,679 + +0.3 62,679 + +0.1 63,081 + GFF1202 0.29 -0.1 63,081 + GFF1202 0.29 +0.4 63,081 + GFF1202 0.29 -0.2 63,081 + GFF1202 0.29 -0.4 63,081 + GFF1202 0.29 +1.1 63,082 - GFF1202 0.29 +0.2 63,153 + GFF1202 0.34 -1.5 63,153 + GFF1202 0.34 -0.0 63,154 - GFF1202 0.34 -0.3 63,154 - GFF1202 0.34 +0.3 63,154 - GFF1202 0.34 +1.2 63,154 - GFF1202 0.34 +0.6 63,211 - GFF1202 0.38 +0.1 63,462 + GFF1202 0.56 -0.4 63,462 + GFF1202 0.56 -0.2 63,463 - GFF1202 0.56 -0.4 63,463 - GFF1202 0.56 -0.4
Or see this region's nucleotide sequence