Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1093

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
8,551	+		GFF1092	0.44	+0.0
8,569	+		GFF1092	0.45	-0.1
8,577	+		GFF1092	0.46	-0.4
8,577	+		GFF1092	0.46	+0.5
8,578	-		GFF1092	0.46	-0.1
8,581	+		GFF1092	0.46	-1.1
8,581	+		GFF1092	0.46	-1.1
8,581	+		GFF1092	0.46	-0.4
8,748	+		GFF1092	0.57	+0.8
8,749	-		GFF1092	0.57	+0.1
8,783	-		GFF1092	0.59	-0.2
8,803	+		GFF1092	0.60	-0.4
8,803	+		GFF1092	0.60	-0.2
8,803	+		GFF1092	0.60	-0.1
8,803	+		GFF1092	0.60	+0.1
9,487	+				+0.4
9,487	+				-0.2
9,696	-		GFF1093	0.59	+0.2
9,696	-		GFF1093	0.59	+1.3
9,879	+				+1.2
9,880	-				-1.3
10,077	+				-0.2
10,131	-				-0.4
10,145	-				-0.1
10,145	-				+0.3
10,145	-				+0.0
10,300	-				-0.4
10,311	+				+0.1
10,361	+				+0.4
10,361	+				-1.1
10,383	+				+0.0
10,398	-				+0.1
10,398	-				+0.5
10,475	+				-0.5
10,489	+				+0.9
10,490	-				-0.1
10,490	-				+0.1
10,490	-				-0.0
10,716	+		GFF1094	0.10	+1.1
10,788	+		GFF1094	0.12	-1.0
10,788	+		GFF1094	0.12	-0.6
10,789	-		GFF1094	0.12	-0.2
10,789	-		GFF1094	0.12	+1.6
10,793	-		GFF1094	0.12	-0.9
10,833	+		GFF1094	0.14	-0.3