Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF100 and GFF101 overlap by 4 nucleotides GFF101 and GFF102 are separated by 43 nucleotides GFF102 and GFF103 are separated by 27 nucleotides
GFF100 - hypothetical protein, at 109,067 to 110,260
GFF100
GFF101 - putative exported protein, at 110,257 to 111,222
GFF101
GFF102 - Integral membrane protein, at 111,266 to 112,087
GFF102
GFF103 - LysR family transcriptional regulator YnfL, at 112,115 to 113,026
GFF103
Position (kb) 110
111
112 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 109.844 kb on + strand, within GFF100 at 109.845 kb on - strand, within GFF100 at 109.976 kb on - strand, within GFF100 at 109.976 kb on - strand, within GFF100 at 109.979 kb on + strand, within GFF100 at 109.979 kb on + strand, within GFF100 at 109.979 kb on + strand, within GFF100 at 109.980 kb on - strand, within GFF100 at 110.408 kb on - strand, within GFF101 at 110.584 kb on + strand, within GFF101 at 110.584 kb on + strand, within GFF101 at 110.585 kb on - strand, within GFF101 at 110.585 kb on - strand, within GFF101 at 110.655 kb on + strand, within GFF101 at 110.656 kb on - strand, within GFF101 at 110.656 kb on - strand, within GFF101 at 110.731 kb on + strand, within GFF101 at 110.732 kb on - strand, within GFF101 at 110.804 kb on + strand, within GFF101 at 110.804 kb on + strand, within GFF101 at 110.805 kb on - strand, within GFF101 at 110.805 kb on - strand, within GFF101 at 110.810 kb on - strand, within GFF101 at 110.997 kb on + strand, within GFF101 at 111.100 kb on + strand, within GFF101 at 111.100 kb on + strand, within GFF101 at 111.101 kb on - strand, within GFF101 at 111.101 kb on - strand, within GFF101 at 111.101 kb on - strand, within GFF101 at 111.101 kb on - strand, within GFF101 at 111.123 kb on + strand, within GFF101 at 111.392 kb on + strand, within GFF102 at 111.393 kb on - strand, within GFF102 at 111.471 kb on + strand, within GFF102 at 111.471 kb on + strand, within GFF102 at 112.086 kb on - strand at 112.086 kb on - strand at 112.086 kb on - strand at 112.116 kb on + strand at 112.117 kb on - strand at 112.212 kb on + strand, within GFF103 at 112.212 kb on + strand, within GFF103
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 109,844 + GFF100 0.65 +0.2 109,845 - GFF100 0.65 -0.9 109,976 - GFF100 0.76 -0.4 109,976 - GFF100 0.76 -0.6 109,979 + GFF100 0.76 -0.1 109,979 + GFF100 0.76 +0.1 109,979 + GFF100 0.76 -0.0 109,980 - GFF100 0.76 -3.8 110,408 - GFF101 0.16 -0.1 110,584 + GFF101 0.34 +0.3 110,584 + GFF101 0.34 +1.5 110,585 - GFF101 0.34 -0.0 110,585 - GFF101 0.34 -0.2 110,655 + GFF101 0.41 -0.0 110,656 - GFF101 0.41 -0.4 110,656 - GFF101 0.41 -0.2 110,731 + GFF101 0.49 -0.0 110,732 - GFF101 0.49 -0.4 110,804 + GFF101 0.57 +0.5 110,804 + GFF101 0.57 +0.3 110,805 - GFF101 0.57 +0.2 110,805 - GFF101 0.57 -0.3 110,810 - GFF101 0.57 +0.0 110,997 + GFF101 0.77 -0.2 111,100 + GFF101 0.87 -0.9 111,100 + GFF101 0.87 -0.1 111,101 - GFF101 0.87 -0.5 111,101 - GFF101 0.87 -1.7 111,101 - GFF101 0.87 -0.3 111,101 - GFF101 0.87 +0.0 111,123 + GFF101 0.90 -0.3 111,392 + GFF102 0.15 +0.1 111,393 - GFF102 0.15 +0.7 111,471 + GFF102 0.25 -0.9 111,471 + GFF102 0.25 +0.6 112,086 - -0.4 112,086 - -0.4 112,086 - -0.1 112,116 + +0.1 112,117 - -0.3 112,212 + GFF103 0.11 -0.5 112,212 + GFF103 0.11 -0.3
Or see this region's nucleotide sequence